Evidence map›Paper›PMID 22475369›Full record

ReviewTrends in genetics : TIG2012

Nuclear noncoding RNA surveillance: is the end in sight?

Sandra L Wolin, Soyeong Sim, Xinguo Chen

Abstract readReview
In one paragraph

Review in Trends in genetics : TIG, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. The life and times of a tRNA.RNA (New York, N.Y.) · 2023
    Review
  2. Article
  3. Review
  4. Y RNAs: Biogenesis, Function and Implications for the Cardiovascular System.Advances in experimental medicine and biology · 2020
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Functional roles of non-coding Y RNAs.The international journal of biochemistry & cell biology · 2015
    Review
  12. Article
  13. Article
  14. Article
  15. Ribogenomics: the science and knowledge of RNA.Genomics, proteomics & bioinformatics · 2014
    Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Sandra L WolinDepartment of Cell Biology, Yale University School of Medicine, 295 Congress Avenue, New Haven, CT 06536, USA. sandra.wolin@yale.edu
Soyeong Sim
Xinguo Chen

Funding

RNA quality control and environmental stressR01GM073863 · NIGMS · YALE UNIVERSITY · PI TSCHUDI, CHRISTIAN · 2005 to 2017
$3.6M
Biogenesis of Small RNAsR01GM048410 · NIGMS · YALE UNIVERSITY · PI WOLIN, SANDRA L. · 1998 to 2009
$2.2M
NIGMS NIH HHS R01 GM048410NIGMS NIH HHS R01GM048410NIGMS NIH HHS R01 GM073863NIGMS NIH HHS R01GM073863
6 · The paper itself

Abstract

Nuclear noncoding RNA (ncRNA) surveillance pathways play key roles in shaping the steady-state transcriptomes of eukaryotic cells. Defective and unneeded ncRNAs are primarily degraded by exoribonucleases that rely on protein cofactors to identify these RNAs. Recent studies have begun to elucidate both the mechanisms by which these cofactors recognize aberrant RNAs and the features that mark RNAs for degradation. One crucial RNA determinant is the presence of an accessible end; in addition, the failure of aberrant RNAs to fold into compact structures and assemble with specific binding proteins probably also contributes to their recognition and subsequent degradation. To date, ncRNA surveillance has been most extensively studied in budding yeast. However, mammalian cells possess nucleases and cofactors that have no known yeast counterparts, indicating that RNA surveillance pathways may be more complex in metazoans. Importantly, there is evidence that the failure of ncRNA surveillance pathways contributes to human disease.

Indexed as

Cell NucleusExosomesHumansRNA FoldingRNA, NuclearRNA StabilityRNA, UntranslatedSaccharomyces cerevisiaeTranscriptomeRNA, NuclearRNA, Untranslated

Identifiers

PMID22475369
PMCPMC3378728

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.