Evidence map›Paper›PMID 22474289›Full record

ArticleThe Journal of biological chemistry2012

Electron transfer in subunit NuoI (TYKY) of Escherichia coli NADH:quinone oxidoreductase (NDH-1).

Prem Kumar Sinha, Eiko Nakamaru-Ogiso, Jesus Torres-Bacete, Motoaki Sato, Norma Castro-Guerrero, Tomoko Ohnishi, Akemi Matsuno-Yagi, Takao Yagi

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 19 citations in OpenAlex.

  1. TheMolecules (Basel, Switzerland) · 2025
    Review
  2. CysB Is a Key Regulator of the Antifungal Activity ofInternational journal of molecular sciences · 2023
    Article
  3. Article
  4. Article
  5. Metalloproteins in the Biology of Heterocysts.Life (Basel, Switzerland) · 2019
    Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Prem Kumar SinhaDepartment of Molecular and Experimental Medicine, MEM-256, The Scripps Research Institute, La Jolla, California 92037.
Eiko Nakamaru-OgisoJohnson Research Foundation, Department of Biochemistry and Biophysics, School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania 19104.
Jesus Torres-BaceteDepartment of Molecular and Experimental Medicine, MEM-256, The Scripps Research Institute, La Jolla, California 92037.
Motoaki SatoDepartment of Molecular and Experimental Medicine, MEM-256, The Scripps Research Institute, La Jolla, California 92037.
Norma Castro-GuerreroDepartment of Molecular and Experimental Medicine, MEM-256, The Scripps Research Institute, La Jolla, California 92037.
Tomoko OhnishiJohnson Research Foundation, Department of Biochemistry and Biophysics, School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania 19104.
Akemi Matsuno-YagiDepartment of Molecular and Experimental Medicine, MEM-256, The Scripps Research Institute, La Jolla, California 92037.
Takao YagiDepartment of Molecular and Experimental Medicine, MEM-256, The Scripps Research Institute, La Jolla, California 92037. Electronic address: yagi@scripps.edu.
Scripps Research Institute · USJohnson Foundation · US

Funding

NADH-UBIQUINONE REDUCTASE OF PARACOCCUS DENITRIFICANSR01GM033712 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI YAGI, TAKAO · 1985 to 2011
$6.4M
PROTON &ELECTRON TRANSFER &ENERGY COUPLING IN SIT IR01GM030736 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI OHNISHI, TOMOKO NONE · 1985 to 2010
$3.1M
NIGMS NIH HHS 3R01GM030736-25S1NIGMS NIH HHS R01 GM030736NIGMS NIH HHS R01 GM033712NIGMS NIH HHS R01GM033712
6 · The paper itself

Abstract

Bacterial proton-translocating NADH:quinone oxidoreductase (NDH-1) consists of a peripheral and a membrane domain. The peripheral domain catalyzes the electron transfer from NADH to quinone through a chain of seven iron-sulfur (Fe/S) clusters. Subunit NuoI in the peripheral domain contains two [4Fe-4S] clusters (N6a and N6b) and plays a role in bridging the electron transfer from cluster N5 to the terminal cluster N2. We constructed mutants for eight individual Cys-coordinating Fe/S clusters. With the exception of C63S, all mutants had damaged architecture of NDH-1, suggesting that Cys-coordinating Fe/S clusters help maintain the NDH-1 structure. Studies of three mutants (C63S-coordinating N6a, P110A located near N6a, and P71A in the vicinity of N6b) were carried out using EPR measurement. These three mutations did not affect the EPR signals from [2Fe-2S] clusters and retained electron transfer activities. Signals at g(z) = 2.09 disappeared in C63S and P110A but not in P71A. Considering our data together with the available information, g(z,x) = 2.09, 1.88 signals are assigned to cluster N6a. It is of interest that, in terms of g(z,x) values, cluster N6a is similar to cluster N4. In addition, we investigated the residues (Ile-94 and Ile-100) that are predicted to serve as electron wires between N6a and N6b and between N6b and N2, respectively. Replacement of Ile-100 and Ile-94 with Ala/Gly did not affect the electron transfer activity significantly. It is concluded that conserved Ile-100 and Ile-94 are not essential for the electron transfer.

Indexed as

Amino Acid SubstitutionElectron Spin Resonance SpectroscopyElectron TransportEscherichia coliEscherichia coli ProteinsMembrane ProteinsMutation, MissenseNADNADH DehydrogenaseProtein Structure, TertiaryEscherichia coli ProteinsMembrane ProteinsNADNADH DehydrogenaseNuoH protein, E coliNuoL protein, E coli

Identifiers

PMID22474289
PMCPMC3366840
OpenAlexW2038012279

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.