Evidence map›Paper›PMID 22474084›Full record

ArticleMolecular & cellular proteomics : MCP2012

A highly efficient multifunctional tandem affinity purification approach applicable to diverse organisms.

Hanhui Ma, Janel R McLean, Lucy Fang-I Chao, Sebastian Mana-Capelli, Murugan Paramasivam, Kirsten A Hagstrom, Kathleen L Gould, Dannel McCollum

Abstract read
In one paragraph

Article in Molecular & cellular proteomics : MCP, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. GSPlant physiology · 2018
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Visualization of repetitive DNA sequences in human chromosomes with transcription activator-like effectors.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  16. Review
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Hanhui MaDepartment of Microbiology and Physiological Systems, University of Massachusetts Medical School, Worcester, Massachusetts 01605, USA.
Janel R McLean
Lucy Fang-I Chao
Sebastian Mana-Capelli
Murugan Paramasivam
Kirsten A Hagstrom
Kathleen L Gould
Dannel McCollum

Funding

Integrated Biological Systems Training in OncologyT32CA119925 · NCI · VANDERBILT UNIVERSITY · PI Vivian Gama, William Patrick Tansey · 2008 to 2026
$7.6M
Regulation anf Function of Clp 1p Protein PhosphataseR01GM068786 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI MCCOLLUM, DANNEL · 2003 to 2010
$2.3M
Condensin and Chromosome Segregation in C. elegansR01GM076378 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI HAGSTROM, KIRSTEN A · 2006 to 2010
$1.5M
Howard Hughes Medical InstituteNCI NIH HHS T32 CA119925NCI NIH HHS T32CA119925NIGMS NIH HHS GM068786NIGMS NIH HHS GM076378NIGMS NIH HHS R01 GM068786NIGMS NIH HHS R01 GM076378
6 · The paper itself

Abstract

Determining the localization, binding partners, and secondary modifications of individual proteins is crucial for understanding protein function. Several tags have been constructed for protein localization or purification under either native or denaturing conditions, but few tags permit all three simultaneously. Here, we describe a multifunctional tandem affinity purification (MAP) method that is both highly efficient and enables protein visualization. The MAP tag utilizes affinity tags inserted into an exposed surface loop of mVenus offering two advantages: (1) mVenus fluorescence can be used for protein localization or FACS-based selection of cell lines; and (2) spatial separation of the affinity tags from the protein results in high recovery and reduced variability between proteins. MAP purification was highly efficient in multiple organisms for all proteins tested. As a test case, MAP combined with liquid chromatography-tandem MS identified known and new candidate binding partners and modifications of the kinase Plk1. Thus the MAP tag is a new powerful tool for determining protein modification, localization, and interactions.

Indexed as

Amino Acid SequenceAnimalsBase SequenceCaenorhabditis elegansCaenorhabditis elegans ProteinsCell Line, TumorChromatography, AffinityChromatography, LiquidHumansImmunoblottingImmunoprecipitationLuminescent ProteinsMicroscopy, FluorescenceMolecular Sequence DataProteomicsRecombinant Fusion ProteinsCaenorhabditis elegans ProteinsLuminescent ProteinsRecombinant Fusion ProteinsSchizosaccharomyces pombe Proteins

Identifiers

PMID22474084
PMCPMC3412978

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.