Evidence map›Paper›PMID 22472776›Full record

ArticleLupus2012

Identification of novel coding mutation in C1qA gene in an African-American pedigree with lupus and C1q deficiency.

B Namjou, M Keddache, D Fletcher, S Dillon, L Kottyan, G Wiley, P M Gaffney, B E Wakeland, C Liang, E K Wakeland and 3 more

Open access · greenAbstract readCase Reports
In one paragraph

Article in Lupus, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

B NamjouCincinnati Children's Hospital Medical Center, Cincinnati, OH, USA. bahram.namjou@cchmc.org
M Keddache
D Fletcher
S Dillon
L Kottyan
G Wiley
P M Gaffney
B E Wakeland
C Liang
E K Wakeland
R H Scofield
K Kaufman
J B Harley
Cincinnati Children's Hospital Medical Center · USOklahoma Medical Research Foundation · USThe University of Texas Southwestern Medical Center · US

Funding

SequencingP01AI083194 · NIAID · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI KIMBERLY, ROBERT P. · 2009 to 2013
$9.6M
Candidate Causal Variants in Systemic Lupus ErythematosusRC2AR058959 · NIAMS · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI GAFFNEY, PATRICK M, WAKELAND, EDWARD K. · 2009 to 2010
$4.3M
Genetic Linkage in LupusR37AI024717 · NIAID · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI HARLEY, JOHN BARKER · 2005 to 2014
$4.2M
NIAID NIH HHS P01 AI083194NIAID NIH HHS R37 AI024717NIAMS NIH HHS 1RC2AR058959-01NIAMS NIH HHS RC2 AR058959
6 · The paper itself

Abstract

objectivesHomozygous C1q deficiency is an extremely rare condition and strongly associated with systemic lupus erythematosus. To assess and characterize C1q deficiency in an African-American lupus pedigree, C1q genomic region was evaluated in the lupus cases and family members.

methodsGenomic DNA from patient was obtained and C1q A, B and C gene cluster was sequenced using next generation sequencing method. The identified mutation was further confirmed by direct Sanger sequencing method in the patient and all blood relatives. C1q levels in serum were measured using sandwich ELISA method.

resultsIn an African-American patient with lupus and C1q deficiency, we identified and confirmed a novel homozygote start codon mutation in C1qA gene that changes amino acid methionine to arginine at position 1. The Met1Arg mutation prevents protein translation (Met1Arg). Mutation analyses of the patient's family members also revealed the Met1Arg homozygote mutation in her deceased brother who also had lupus with absence of total complement activity consistent with a recessive pattern of inheritance.

conclusionThe identification of new mutation in C1qA gene that disrupts the start codon (ATG to AGG (Met1Arg)) has not been reported previously and it expands the knowledge and importance of the C1q gene in the pathogenesis of lupus especially in the high-risk African-American population.

Indexed as

Point MutationAdultAmino Acid SubstitutionBase SequenceBlack or African AmericanCodon, InitiatorComplement C1qDNA Mutational AnalysisFemaleGenes, RecessiveHomozygoteHumansLupus Erythematosus, SystemicMalePedigreeYoung AdultCodon, InitiatorComplement C1q

Identifiers

PMID22472776
PMCPMC3508769
OpenAlexW2087192939

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.