Evidence map›Paper›PMID 22471526›Full record

ArticleGenes, brain, and behavior2012

Confirmation of an epilepsy modifier locus on mouse chromosome 11 and candidate gene analysis by RNA-Seq.

N A Hawkins, J A Kearney

Open access · bronzeAbstract read
In one paragraph

Article in Genes, brain, and behavior, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Article
  3. Strain-dependent effects on neurobehavioral and seizure phenotypes inbioRxiv : the preprint server for biology · 2023
    Article
  4. Article
  5. Gabra2 is a genetic modifier of Dravet syndrome in mice.Mammalian genome : official journal of the International Mammalian Genome Society · 2021
    Article
  6. Modifier genes in SCN1A-related epilepsy syndromes.Molecular genetics & genomic medicine · 2020
    Article
  7. Article
  8. Article
  9. Review
  10. CaMKII modulates sodium current in neurons from epilepticProceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Genes, behavior and next-generation RNA sequencing.Genes, brain, and behavior · 2013
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

N A HawkinsNeuroscience Program Division of Genetic Medicine, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN 37232, USA.
J A Kearney
Vanderbilt University Medical Center · US

Funding

Combined Approach to the Genetic Basis of EpilepsyR01NS053792 · NINDS · VANDERBILT UNIVERSITY · PI KEARNEY, JENNIFER A · 2006 to 2019
$4.7M
TRAINING PROGRAM IN ION CHANNEL AND TRANSPORTER BIOLOGYT32NS007491 · NINDS · VANDERBILT UNIVERSITY MEDICAL CENTER · PI DENTON, JEROD S. · 2001 to 2020
$4.1M
Mice with Human SCN1A Alleles Generated by Recombinase-Mediated Cassette ExchangeR21NS063097 · NINDS · VANDERBILT UNIVERSITY · PI KEARNEY, JENNIFER A · 2009 to 2010
$368k
Identification of Epilepsy Modifier Genes in a Mouse ModelF31NS077700 · NINDS · VANDERBILT UNIVERSITY · PI HAWKINS, NICOLE A · 2011 to 2013
$51k
NINDS NIH HHS F31 NS077700NINDS NIH HHS F31-NS077700NINDS NIH HHS R01 NS053792NINDS NIH HHS R01-NS063097NINDS NIH HHS R21 NS063097NINDS NIH HHS T32 NS007491NINDS NIH HHS T32-NS07491
6 · The paper itself

Abstract

Epilepsy is a neurological disorder affecting approximately 1% of the worldwide population. Mutations in voltage-gated sodium channels have been identified in several monogenic epilepsy syndromes. Over 800 mutations have been identified in the voltage-gated sodium channel genes SCN1A and SCN2A in human epilepsies, including genetic epilepsy with febrile seizures plus (GEFS+) and Dravet syndrome. In GEFS+ families, affected members with the same mutation often display variability in clinical severity of the disease. This suggests that additional genes modify the effect of the primary mutation, resulting in the variable clinical presentation. The Scn2a(Q54) transgenic mouse model has an epilepsy phenotype that varies depending on the genetic strain background. Scn2a(Q54) mice congenic on the C57BL/6J strain exhibit delayed seizure onset and improved survival compared to (C57BL/6J × SJL/J)F1.Q54 mice. Two modifier loci of Scn2a(Q54) seizure susceptibility were mapped and designated Moe1 (modifier of epilepsy) on chromosome (chr) 11 and Moe2 on chr 19. To confirm Moe1 and refine its position, we generated interval-specific congenic lines carrying C57BL/6J-derived chr 11 alleles on the SJL/J strain and refined the map position to 89-104 Mb. We then used RNA-Seq for candidate analysis in the modifier region. C57BL/6J and SJL/J male and female brain RNAs were sequenced, revealing numerous significant transcriptome differences and coding single-nucleotide polymorphisms. Additional consideration of gene function and expression suggested several strong candidate modifier genes, including two voltage-gated calcium channel subunits, Cacna1g and Cacnb1, and the proline and acidic amino acid-rich basic leucine zipper transcription factor, Hlf.

Indexed as

AllelesAnimalsChromosomes, MammalianEpilepsyGenes, ModifierGenotypeMaleMiceMutationNAV1.2 Voltage-Gated Sodium ChannelNerve Tissue ProteinsSodium ChannelsTranscriptomeNAV1.2 Voltage-Gated Sodium ChannelNerve Tissue ProteinsSCN2A protein, humanScn2a protein, mouseSodium Channels

Identifiers

PMID22471526
PMCPMC3370141
OpenAlexW2009043356

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.