Evidence map›Paper›PMID 22468954›Full record

ReviewExpert opinion on drug discovery2012

Third-generation sequencing techniques and applications to drug discovery.

Fatih Ozsolak

Abstract readReview
In one paragraph

Review in Expert opinion on drug discovery, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Retinitis Pigmentosa: Current Clinical Management and Emerging Therapies.International journal of molecular sciences · 2023
    Review
  6. Article
  7. InnovativeFrontiers in genetics · 2022
    Review
  8. Review
  9. Article
  10. Article
  11. Review
  12. Review
  13. Managing risks in drug discovery: reproducibility of published findings.Naunyn-Schmiedeberg's archives of pharmacology · 2016
    Review
  14. Review
  15. Plant pathogen nanodiagnostic techniques: forthcoming changes?Biotechnology, biotechnological equipment · 2014
    Article
  16. Article
  17. Biases in small RNA deep sequencing data.Nucleic acids research · 2014
    Review
  18. Genes, behavior and next-generation RNA sequencing.Genes, brain, and behavior · 2013
    Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

1 author.

Fatih OzsolakHelicos BioSciences Corp., Cambridge, MA 02139, USA. fatihozsolak@gmail.com

Funding

Attomole-Level High-Throughput GenomicsR44HG005279 · NHGRI · SEQLL, LLC · PI KAPRANOV, PHILIPP · 2010 to 2012
$1.6M
True Direct Single Molecule RNA SequencingR01HG005230 · NHGRI · SEQLL, LLC · PI MILOS, PATRICE M · 2010 to 2012
$1.6M
NHGRI NIH HHS R01 HG005230NHGRI NIH HHS R44 HG00527NHGRI NIH HHS R44 HG005279
6 · The paper itself

Abstract

introductionThere is an immediate need for functional and molecular studies to decipher differences between disease and 'normal' settings to identify large quantities of validated targets with the highest therapeutic utilities. Furthermore, drug mechanism of action and biomarkers to predict drug efficacy and safety need to be identified for effective design of clinical trials, decreasing attrition rates, regulatory agency approval process and drug repositioning. By expanding the power of genetics and pharmacogenetics studies, next-generation nucleic acid sequencing technologies have started to play an important role in all stages of drug discovery. AREAS COVERED: This article reviews the first- and second-generation sequencing technologies (SGSTs) and challenges they pose to biomedicine. The article then focuses on the emerging third-generation sequencing technologies (TGSTs), their technological foundations and potential contributions to drug discovery. EXPERT OPINION: Despite the scientific and commercial success of SGSTs, the goal of rapid, comprehensive and unbiased sequencing of nucleic acids has not been achieved. TGSTs promise to increase sequencing throughput and read lengths, decrease costs, run times and error rates, eliminate biases inherent in SGSTs and offer capabilities beyond nucleic acid sequencing. Such changes will have positive impact on all sequencing applications to drug discovery.

Indexed as

Drug DesignDrug DiscoveryGenome, HumanHigh-Throughput Nucleotide SequencingHigh-Throughput Screening AssaysHumansPharmacogeneticsSequence Analysis, DNASequence Analysis, RNA

Identifiers

PMID22468954
PMCPMC3319653

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.