Evidence map›Paper›PMID 22467785›Full record

ArticleJournal of bacteriology2012

The structure of Mlc titration factor A (MtfA/YeeI) reveals a prototypical zinc metallopeptidase related to anthrax lethal factor.

Qingping Xu, Anna-Katharina Göhler, Anne Kosfeld, Dennis Carlton, Hsiu-Ju Chiu, Heath E Klock, Mark W Knuth, Mitchell D Miller, Marc-André Elsliger, Ashley M Deacon and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.8field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Inhibitors of the Metalloproteinase Anthrax Lethal Factor.Current topics in medicinal chemistry · 2016
    Review
  7. Article
  8. Architecture and function of metallopeptidase catalytic domains.Protein science : a publication of the Protein Society · 2014
    Review
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 2 countries.

Qingping XuJoint Center for Structural Genomics, SLAC National Accelerator Laboratory, Menlo Park, CA, USA.
Anna-Katharina Göhler
Anne Kosfeld
Dennis Carlton
Hsiu-Ju Chiu
Heath E Klock
Mark W Knuth
Mitchell D Miller
Marc-André Elsliger
Ashley M Deacon
Adam Godzik
Scott A Lesley
Knut Jahreis
Ian A Wilson
SLAC National Accelerator Laboratory · USOsnabrück University · DEStanford Synchrotron Radiation Lightsource · USGenomics Institute of the Novartis Research Foundation · USScripps Research Institute · USUniversity of California, San Diego · US

Funding

Technology Evaluation CoreU54GM074898 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI STEVENS, RAYMOND C · 2005 to 2009
$50.6M
Structure Determination Core at SSRLU54GM094586 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI WILSON, IAN A · 2010 to 2014
$40.1M
ZWITTERION SURFACTANT DDMAB FOR IMPROV STABIL OF PROTEINP41RR001209 · NCRR · STANFORD UNIVERSITY · PI GONZALEZ, ANA M · 1985 to 2011
$38.9M
NCRR NIH HHS P41 RR001209NCRR NIH HHS P41RR001209NIGMS NIH HHS GM074898NIGMS NIH HHS U54 GM074898NIGMS NIH HHS U54 GM094586
6 · The paper itself

Abstract

MtfA of Escherichia coli (formerly YeeI) was previously identified as a regulator of the phosphoenolpyruvate (PEP)-dependent:glucose phosphotransferase system. MtfA homolog proteins are highly conserved, especially among beta- and gammaproteobacteria. We determined the crystal structures of the full-length MtfA apoenzyme from Klebsiella pneumoniae and its complex with zinc (holoenzyme) at 2.2 and 1.95 Å, respectively. MtfA contains a conserved H(149)E(150)XXH(153)+E(212)+Y(205) metallopeptidase motif. The presence of zinc in the active site induces significant conformational changes in the region around Tyr205 compared to the conformation of the apoenzyme. Additionally, the zinc-bound MtfA structure is in a self-inhibitory conformation where a region that was disordered in the unliganded structure is now observed in the active site and a nonproductive state of the enzyme is formed. MtfA is related to the catalytic domain of the anthrax lethal factor and the Mop protein involved in the virulence of Vibrio cholerae, with conservation in both overall structure and in the residues around the active site. These results clearly provide support for MtfA as a prototypical zinc metallopeptidase (gluzincin clan).

Indexed as

Amino Acid MotifsAmino Acid SequenceAntigens, BacterialBacterial ProteinsBacterial ToxinsCatalytic DomainCrystallography, X-RayKlebsiella pneumoniaeMetalloendopeptidasesMetalloproteasesModels, MolecularMolecular Sequence DataProtein BindingSequence AlignmentZincanthrax toxinAntigens, BacterialBacterial ProteinsBacterial ToxinsMetalloendopeptidasesMetalloproteasesMop protein, Vibrio choleraeZinc

Identifiers

PMID22467785
PMCPMC3370624
OpenAlexW2090574955

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.