Evidence map›Paper›PMID 22467272›Full record

ArticleProtein & cell2012

Affinity maturation of anti-TNF-alpha scFv with somatic hypermutation in non-B cells.

Shaopeng Chen, Junkang Qiu, Chuan Chen, Chunchun Liu, Yuheng Liu, Lili An, Junying Jia, Jie Tang, Lijun Wu, Haiying Hang

Open access · bronzeAbstract read
In one paragraph

Article in Protein & cell, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.4field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
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  4. Article
  5. The application of adenine deaminase in antibody affinity maturation.Applied microbiology and biotechnology · 2023
    Article
  6. Article
  7. Article
  8. EASINESS:Frontiers in immunology · 2021
    Article
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  10. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Shaopeng ChenKey Laboratory for Protein and Peptide Pharmaceuticals, National Laboratory of Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing, China.
Junkang Qiu
Chuan Chen
Chunchun Liu
Yuheng Liu
Lili An
Junying Jia
Jie Tang
Lijun Wu
Haiying Hang
Chinese Academy of Sciences · CNInstitute of Biophysics · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Activation-induced cytidine deaminase (AID) is required for the generation of antibody diversity through initiating both somatic hypermutation (SHM) and class switch recombination. A few research groups have successfully used the feature of AID for generating mutant libraries in directed evolution of target proteins in B cells in vitro. B cells, cultured in suspension, are not convenient for transfection and cloning. In this study, we established an AID-based mutant accumulation and sorting system in adherent human cells. Mouse AID gene was first transfected into the human non-small cell lung carcinoma H1299 cells, and a stable cell clone (H1299-AID) was selected. Afterwards, anti-hTNF-α scFv (ATscFv) was transfected into H1299-AID cells and ATscFv was displayed on the surface of H1299-AID cells. By 4-round amplification/flow cytometric sorting for cells with the highest affinities to hTNF-alpha, two ATscFv mutant gene clones were isolated. Compared with the wild type ATscFv, the two mutants were much more efficient in neutralizing cytotoxicity of hTNF-alpha. The results indicate that directed evolution by somatic hypermutation can be carried out in adherent non-B cells, which makes directed evolution in mammalian cells easier and more efficient.

Indexed as

Antibody AffinityAICDA (Activation-Induced Cytidine Deaminase)AnimalsCells, CulturedCytidine DeaminaseHEK293 CellsHumansImmunoglobulin Variable RegionMiceMutationSingle-Chain AntibodiesSomatic Hypermutation, ImmunoglobulinTumor Necrosis Factor-alphaAICDA (Activation-Induced Cytidine Deaminase)Cytidine DeaminaseImmunoglobulin Variable RegionSingle-Chain AntibodiesTumor Necrosis Factor-alpha

Identifiers

PMID22467272
PMCPMC4875482
OpenAlexW2088501354

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.