Evidence map›Paper›PMID 22466957›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2012

Genetic diversity in European Pisum germplasm collections.

R Jing, M A Ambrose, M R Knox, P Smykal, M Hybl, Á Ramos, C Caminero, J Burstin, G Duc, L J M van Soest and 6 more

Abstract read
In one paragraph

Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

R JingDivision of Plant Sciences, University of Dundee at JHI, Invergowrie, Dundee DD2 5DA, UK.
M A Ambrose
M R Knox
P Smykal
M Hybl
Á Ramos
C Caminero
J Burstin
G Duc
L J M van Soest
W K Święcicki
M G Pereira
M Vishnyakova
G F Davenport
A J Flavell
T H N Ellis

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The distinctness of, and overlap between, pea genotypes held in several Pisum germplasm collections has been used to determine their relatedness and to test previous ideas about the genetic diversity of Pisum. Our characterisation of genetic diversity among 4,538 Pisum accessions held in 7 European Genebanks has identified sources of novel genetic variation, and both reinforces and refines previous interpretations of the overall structure of genetic diversity in Pisum. Molecular marker analysis was based upon the presence/absence of polymorphism of retrotransposon insertions scored by a high-throughput microarray and SSAP approaches. We conclude that the diversity of Pisum constitutes a broad continuum, with graded differentiation into sub-populations which display various degrees of distinctness. The most distinct genetic groups correspond to the named taxa while the cultivars and landraces of Pisum sativum can be divided into two broad types, one of which is strongly enriched for modern cultivars. The addition of germplasm sets from six European Genebanks, chosen to represent high diversity, to a single collection previously studied with these markers resulted in modest additions to the overall diversity observed, suggesting that the great majority of the total genetic diversity collected for the Pisum genus has now been described. Two interesting sources of novel genetic variation have been identified. Finally, we have proposed reference sets of core accessions with a range of sample sizes to represent Pisum diversity for the future study and exploitation by researchers and breeders.

Indexed as

Biological Specimen BanksGenetic VariationBayes TheoremEuropeGene FrequencyGenetics, PopulationGeographyMultifactorial InheritanceMutagenesis, InsertionalPisum sativumPolymorphism, GeneticPopulation DynamicsRetroelementsSeedsRetroelements

Identifiers

PMID22466957
PMCPMC3385700

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.