Evidence map›Paper›PMID 22465009›Full record

ArticleBiochemical and biophysical research communications2012

Ligand structural motifs can decouple glucocorticoid receptor transcriptional activation from target promoter occupancy.

Raymond D Blind, Inés Pineda-Torra, Yong Xu, H Eric Xu, Michael J Garabedian

Open access · greenAbstract read
In one paragraph

Article in Biochemical and biophysical research communications, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.2field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 14 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. SF-1 Induces Nuclear PIP2.Biomolecules · 2023
    Article
  5. Review
  6. Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Raymond D BlindDepartment of Pharmacology, New York University School of Medicine, New York, NY 10016, USA. ray.blind@gmail.com
Inés Pineda-Torra
Yong Xu
H Eric Xu
Michael J Garabedian
New York University · USVan Andel Institute · US

Funding

UCSF IRACDA Scholars ProgramK12GM081266 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Raymond M. Esquerra, HOLLY A. INGRAHAM · 2007 to 2026
$19.4M
Structural Genomics of Orphan Nuclear ReceptorsR01DK071662 · NIDDK · VAN ANDEL RESEARCH INSTITUTE · PI XU, H ERIC · 2005 to 2017
$5.1M
REGULATION OF GLUCOCORTICOID RECEPTOR BY PHOSPHORYLATIONR01DK054836 · NIDDK · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI GARABEDIAN, MICHAEL J · 1999 to 2002
$952k
NIDDK NIH HHS R01 DK054836NIDDK NIH HHS R01 DK071662NIGMS NIH HHS K12 GM081266
6 · The paper itself

Abstract

Glucocorticoid (GC) induction of the tyrosine aminotransferase (TAT) gene by the glucocorticoid receptor (GR) is a classic model used to investigate steroid-regulated gene expression. Classic studies analyzing GC-induction of the TAT gene demonstrated that despite having very high affinity for GR, some steroids cannot induce maximal TAT enzyme activity, but the molecular basis for this phenomenon is unknown. Here, we used RT-PCR and chromatin immunoprecipitation to determine TAT mRNA accumulation and GR recruitment to the TAT promoter (TAT-GRE) in rat hepatoma cells induced by seven GR ligands: dexamethasone (DEX), cortisol (CRT), corticosterone (CCS), 11-deoxycorticosterone (DOC), aldosterone (ALD), progesterone (PRG) and 17-hydroxyprogesterone (17P). As expected, DEX, CRT, CCS and ALD all induced both TAT mRNA and GR recruitment to the TAT-GRE, while PRG and 17P did not. However, while DOC could not induce significant TAT mRNA, it did induce robust GR occupancy of the TAT-GRE. DOC also induced recruitment of the histone acetyltransferase p300 to the TAT-GRE as efficiently as DEX. These DOC-induced effects recapitulated at another GR target gene (sulfonyltransferase 1A1), and DOC also failed to promote the multiple changes in gene expression required for glucocorticoid-dependent 3T3-L1 adipocyte differentiation. Structural simulations and protease sensitivity assays suggest that DOC and DEX induce different conformations in GR. Thus, although steroids that bind GR with high affinity can induce GR and p300 occupancy of target promoters, they may not induce a conformation of GR capable of activating transcription.

Indexed as

17-alpha-Hydroxyprogesterone3T3-L1 CellsAdipocytesAdipogenesisAdrenal Cortex HormonesAldosteroneAnimalsCell Line, TumorCorticosteroneDesoxycorticosteroneDexamethasoneHydrocortisoneLigandsMiceMolecular StructureProgesterone17-alpha-HydroxyprogesteroneAdrenal Cortex HormonesAldosteroneCorticosteroneDesoxycorticosteroneDexamethasoneHydrocortisoneLigandsProgesteroneReceptors, Glucocorticoid

Identifiers

PMID22465009
PMCPMC3340612
OpenAlexW1967450189

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.