Evidence map›Paper›PMID 22464736›Full record

ArticleTuberculosis (Edinburgh, Scotland)2012

Mycobacterium tuberculosis WhiB1 represses transcription of the essential chaperonin GroEL2.

Melanie R Stapleton, Laura J Smith, Debbie M Hunt, Roger S Buxton, Jeffrey Green

Open access · hybridAbstract read
In one paragraph

Article in Tuberculosis (Edinburgh, Scotland), 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
  2. WhiB-like proteins: Diversity of structure, function and mechanism.Biochimica et biophysica acta. Molecular cell research · 2024
    Review
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  15. Fe-S proteins that regulate gene expression.Biochimica et biophysica acta · 2015
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Melanie R StapletonDepartment of Molecular Biology and Biotechnology, University of Sheffield, Sheffield S10 2TN, UK. m.stapleton@sheffield.ac.uk
Laura J Smith
Debbie M Hunt
Roger S Buxton
Jeffrey Green
University of Sheffield · GB

Funding

Biotechnology and Biological Sciences Research CouncilMedical Research Council MC_U117585867Medical Research Council U117585867
6 · The paper itself

Abstract

A central feature of TB pathogenesis is the formation of Mycobacterium tuberculosis latent infections that can persist for decades. Nitric oxide produced by infected lung macrophages promotes expression of genes associated with dormancy, and impaired nitric oxide production can lead to reactivation of latent disease. Recently, WhiB1 was identified as a nitric oxide-responsive transcription factor. Here it is shown that apo-WhiB1 binds to groEL2 (Rv0440) promoter DNA. Apo-WhiB1 inhibited transcription from the groEL2 promoter in vitro and the transcript start was located ∼181 bases upstream of the groEL2 start codon. Electrophoretic mobility shift assays with sub-fragments of the groEL2 promoter indicated that the complete Rv0439c-Rv0440 intergenic region was required for WhiB1 binding, suggesting that this region possessed more than one WhiB1-binding site. DNase I footprinting identified a WhiB1-binding region that overlapped the -35 element of the groEL2 promoter. The CRP-family transcription factor Cmr (Rv1675c) was shown to bind the groEL2 promoter and activate transcription in vitro in the presence or absence of cAMP. Therefore, it is suggested that WhiB1 acts to oppose Cmr-mediated cAMP-independent activation of groEL2 expression in the presence of nitric oxide by promoter occlusion.

Indexed as

Transcription, GeneticBacterial ProteinsBase SequenceBinding SitesChaperonin 60DNA, BacterialDNA FootprintingDNA, IntergenicElectrophoretic Mobility Shift AssayGene Expression RegulationGenes, BacterialHumansIron-Sulfur ProteinsMolecular Sequence DataMycobacterium tuberculosisNitric OxideBacterial ProteinsChaperonin 60DNA, BacterialDNA, IntergenicIron-Sulfur ProteinsNitric OxideTranscription FactorsWhiB1 protein, Mycobacterium tuberculosis

Identifiers

PMID22464736
PMCPMC3430963
OpenAlexW2065524788

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.