Evidence map›Paper›PMID 22461622›Full record

ArticleThe Journal of biological chemistry2012

Elucidating essential role of conserved carboxysomal protein CcmN reveals common feature of bacterial microcompartment assembly.

James N Kinney, Annette Salmeen, Fei Cai, Cheryl A Kerfeld

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 99 papers.

0numbers the graph read from it
0cells of the map it votes in
99citing papers in PubMed
12.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

99 citing papers in PubMed, 176 citations in OpenAlex.

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39 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

James N KinneyDepartment of Energy Joint Genome Institute, Walnut Creek, California 94598; Physical Biosciences Division, Lawrence Berkeley National Laboratory, University of California, Berkeley, California 94720.
Annette SalmeenDepartment of Energy Joint Genome Institute, Walnut Creek, California 94598; Physical Biosciences Division, Lawrence Berkeley National Laboratory, University of California, Berkeley, California 94720.
Fei CaiDepartment of Energy Joint Genome Institute, Walnut Creek, California 94598; Physical Biosciences Division, Lawrence Berkeley National Laboratory, University of California, Berkeley, California 94720.
Cheryl A KerfeldDepartment of Energy Joint Genome Institute, Walnut Creek, California 94598; Physical Biosciences Division, Lawrence Berkeley National Laboratory, University of California, Berkeley, California 94720; Department of Plant and Microbial Biology, University of California, Berkeley, California 94720. Electronic address: ckerfeld@lbl.gov.
Lawrence Berkeley National Laboratory · USJoint Genome Institute · USUniversity of California, Berkeley · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacterial microcompartments are organelles composed of a protein shell that surrounds functionally related proteins. Bioinformatic analysis of sequenced genomes indicates that homologs to shell protein genes are widespread among bacteria and suggests that the shell proteins are capable of encapsulating diverse enzymes. The carboxysome is a bacterial microcompartment that enhances CO(2) fixation in cyanobacteria and some chemoautotrophs by sequestering ribulose-1,5-bisphosphate carboxylase/oxygenase and carbonic anhydrase in the microcompartment shell. Here, we report the in vitro and in vivo characterization of CcmN, a protein of previously unknown function that is absolutely conserved in β-carboxysomal gene clusters. We show that CcmN localizes to the carboxysome and is essential for carboxysome biogenesis. CcmN has two functionally distinct regions separated by a poorly conserved linker. The N-terminal portion of the protein is important for interaction with CcmM and, by extension, ribulose-1,5-bisphosphate carboxylase/oxygenase and the carbonic anhydrase CcaA, whereas the C-terminal peptide is essential for interaction with the carboxysome shell. Deletion of the peptide abolishes carboxysome formation, indicating that its interaction with the shell is an essential step in microcompartment formation. Peptides with similar length and sequence properties to those in CcmN can be bioinformatically detected in a large number of diverse proteins proposed to be encapsulated in functionally distinct microcompartments, suggesting that this peptide and its interaction with its cognate shell proteins are common features of microcompartment assembly.

Indexed as

Bacterial ProteinsCarbon DioxideProtein Structure, TertiarySynechococcusBacterial ProteinsCarbon Dioxide

Identifiers

PMID22461622
PMCPMC3366800
OpenAlexW1998370988

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.