Evidence map›Paper›PMID 22461030›Full record

ReviewAmerican journal of physiology. Gastrointestinal and liver physiology2012

A nomenclature for intestinal in vitro cultures.

Matthias Stelzner, Michael Helmrath, James C Y Dunn, Susan J Henning, Courtney W Houchen, Calvin Kuo, John Lynch, Linheng Li, Scott T Magness, Martin G Martin and 3 more

Abstract readReview
In one paragraph

Review in American journal of physiology. Gastrointestinal and liver physiology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 139 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
139citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

139 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Guiding Principles: Reporting Elements for Gastrointestinal Organoid Research.Cellular and molecular gastroenterology and hepatology · 2026
    Guideline
  2. Review
  3. Article
  4. A Shared Framework for Gastrointestinal Organoid Research: It's Time.Cellular and molecular gastroenterology and hepatology · 2026
    Article
  5. Review
  6. Novel organoids andParasitology · 2025
    Review
  7. Article
  8. Simulator of the Human Intestinal Microbial Ecosystem (SHIMEPharmaceuticals (Basel, Switzerland) · 2024
    Review
  9. Article
  10. Review
  11. Review
  12. Recent Advances in Cell-Based In Vitro Models to Recreate Human Intestinal Inflammation.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2023
    Review
  13. Article
  14. Article
  15. Article
  16. Gastrointestinal organoids in the study of viral infections.American journal of physiology. Gastrointestinal and liver physiology · 2023
    Review
  17. Review
  18. Review
  19. Article
  20. In Vitro Apical-Out Enteroid Model of Necrotizing Enterocolitis.Journal of visualized experiments : JoVE · 2022
    Article

79 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Matthias StelznerUCLA/VA Greater Los Angeles, 11301 Wilshire Blvd. (10H2) Los Angeles, CA 90073, USA. stelzner@ucla.edu
Michael Helmrath
James C Y Dunn
Susan J Henning
Courtney W Houchen
Calvin Kuo
John Lynch
Linheng Li
Scott T Magness
Martin G Martin
Melissa H Wong
Jian Yu
NIH Intestinal Stem Cell Consortium

Funding

Regulation of actively proliferating and quiescent intestinal stem cellsU01DK085527 · NIDDK · STANFORD UNIVERSITY · PI KUO, CALVIN J · 2009 to 2023
$6.9M
Intestinal Stem Cell Consortium Coordinating CenterU01DK085532 · NIDDK · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI NILAND, JOYCE CAROL · 2009 to 2018
$6.5M
Isolation and Characterization of Intestinal Stem CellsU01DK085507 · NIDDK · STOWERS INSTITUTE FOR MEDICAL RESEARCH · PI LI, LINHENG · 2009 to 2023
$6.2M
Intestinal Stem Cell Culture and Entero-Endocrine Lineage DevelopmentU01DK085535 · NIDDK · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI DUNN, JAMES C, MARTIN, MARTIN G · 2009 to 2018
$3.7M
Limited Competition for the Continuation of the Intestinal Stem Cell Consortium Coordinating CenterU24DK085532 · NIDDK · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI NILAND, JOYCE CAROL · 2019 to 2023
$2.3M
Intestinal Stem Cell Survival and Renewal Coordinately Regulated by PUMA and p21U01DK085570 · NIDDK · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI YU, JIAN · 2009 to 2014
$2.2M
The Intestinal Stem Cell NicheU01DK085551 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI LYNCH, JOHN P., RUSTGI, ANIL K · 2009 to 2014
$2.1M
Collaborative Approaches to the Study of Intestinal Epithelial Stem CellsU01DK085547 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI HENNING, SUSAN J. · 2009 to 2013
$2.0M
Isolation and Characterization of Intestinal Stem Cells Using Novel Markers (RP)U01DK085508 · NIDDK · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI HOUCHEN, COURTNEY WAYNE · 2009 to 2014
$2.0M
Characterization of intestinal stem cells (research project)U01DK085525 · NIDDK · OREGON HEALTH & SCIENCE UNIVERSITY · PI WONG, MELISSA H. · 2009 to 2014
$2.0M
Mechanisms of Intestinal Stem Cell Expansion Following ResectionR01DK083325 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI HELMRATH, MICHAEL A. · 2009 to 2013
$1.5M
Mouse models for esophageal Cox-2 oxidative stress and DNA damageK26OD012097 · OD · UNIVERSITY OF PENNSYLVANIA · PI LYNCH, JOHN P. · 2013 to 2017
$737k
NIDDK NIH HHS U01 DK085507NIDDK NIH HHS U01 DK085527NIDDK NIH HHS U01 DK085535NIDDK NIH HHS U01 DK085551NIDDK NIH HHS U01DK85507NIDDK NIH HHS U01DK85508NIDDK NIH HHS U01DK85525NIDDK NIH HHS U01DK85527NIDDK NIH HHS U01DK85532NIDDK NIH HHS U01DK85535NIDDK NIH HHS U01DK85547NIDDK NIH HHS U01DK85551NIDDK NIH HHS U01DK85570NIDDK NIH HHS U24 DK085532NIH HHS K26 OD012097
6 · The paper itself

Abstract

Many advances have been reported in the long-term culture of intestinal mucosal cells in recent years. A significant number of publications have described new culture media, cell formations, and growth patterns. Furthermore, it is now possible to study, e.g., the capabilities of isolated stem cells or the interactions between stem cells and mesenchyme. However, at the moment there is significant variation in the way these structures are described and named. A standardized nomenclature would benefit the ability to communicate and compare findings from different laboratories using the different culture systems. To address this issue, members of the NIH Intestinal Stem Cell Consortium herein propose a systematic nomenclature for in vitro cultures of the small and large intestine. We begin by describing the structures that are generated by preparative steps. We then define and describe structures produced in vitro, specifically: enterosphere, enteroid, reconstituted intestinal organoid, induced intestinal organoid, colonosphere, colonoid, and colonic organoid.

Indexed as

Cell Culture TechniquesColonHumansIntestinal MucosaIntestine, SmallStem CellsTerminology as Topic

Identifiers

PMID22461030
PMCPMC3378093

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.