ArticleGenome biology2012
The transcription factor encyclopedia.
Open access · goldAbstract read
In one paragraph
Article in Genome biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 78 papers.
0numbers the graph read from it
0cells of the map it votes in
78citing papers in PubMed
6.2field-weighted citation impact, top 3% of its field
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
78 citing papers in PubMed, 160 citations in OpenAlex.
- Causality-aware graph neural networks for functional stratification and phenotype prediction at scale.NPJ systems biology and applications · 2025Article
- Accurate Transcription Factor Activity Inference to Decipher Cell Identity from Single-Cell Transcriptomic Data with MetaTF.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025Article
- An integrative analysis combining bioinformatics, network pharmacology and experimental methods identified key genes of EGCG targets in Nasopharyngeal Carcinoma.Discover oncology · 2025Article
- Transcriptome sequencing reveals regulatory genes associated with neurogenic hearing loss.BMC medical genomics · 2025Article
- Cell-type specific epigenetic and transcriptional mechanisms in substance use disorder.Frontiers in cellular neuroscience · 2025Review
- Zinc finger transcription factor ZFP1 is associated with growth, conidiation, osmoregulation, and virulence in the Polygonatum kingianum pathogen Fusarium oxysporum.Scientific reports · 2024Article
- Promoter Methylation Leads to Hepatocyte Nuclear Factor 4A Loss and Pancreatic Cancer Aggressiveness.Gastro hep advances · 2024Article
- Mechanistic analysis of the hardening process of the thorns on stems ofFrontiers in genetics · 2024Article
- Article
- Genome-Wide Identification and Expression Analysis of the SBP-Box Gene Family in Loquat Fruit Development.Genes · 2023Article
- The APC/C E3 ligase subunit ANAPC11 mediates FOXO3 protein degradation to promote cell proliferation and lymph node metastasis in urothelial bladder cancer.Cell death & disease · 2023Article
- Identification, characterization, and prognosis investigation of pivotal genes shared in different stages of breast cancer.Scientific reports · 2023Article
- Targeted splicing therapy: new strategies for colorectal cancer.Frontiers in oncology · 2023Review
- A novel HIF1α-STIL-FOXM1 axis regulates tumor metastasis.Journal of biomedical science · 2022Article
- CES2 sustains HNF4α expression to promote pancreatic adenocarcinoma progression through an epoxide hydrolase-dependent regulatory loop.Molecular metabolism · 2022Article
- Identification of novel genes and pathways regulated by the orphan nuclear receptor COUP-TFII in mouse MA-10 Leydig cells†.Biology of reproduction · 2021Article
- Experiment level curation of transcriptional regulatory interactions in neurodevelopment.PLoS computational biology · 2021Article
- Nanoparticle-based fluorescence probe for detection of NF-κB transcription factor in single cell via steric hindrance.Mikrochimica acta · 2021Article
- Hepatocyte nuclear factor 4α and cancer-related cell signaling pathways: a promising insight into cancer treatment.Experimental & molecular medicine · 2021Review
- PAX8, an Emerging Player in Ovarian Cancer.Advances in experimental medicine and biology · 2021Review
18 more citing papers are in PubMed but not listed here.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
114 authors at 20 institutions in 13 countries.
Dimas YusufDepartment of Medical Genetics, Faculty of Medicine, Centre for Molecular Medicine and Therapeutics, Child and Family Research Institute, University of British Columbia, Vancouver, Canada.
Stefanie L Butland
Magdalena I Swanson
Eugene Bolotin
Amy Ticoll
Warren A Cheung
Xiao Yu Cindy Zhang
Christopher T D Dickman
Debra L Fulton
Jonathan S Lim
Jake M Schnabl
Oscar H P Ramos
Mireille Vasseur-Cognet
Charles N de Leeuw
Elizabeth M Simpson
Gerhart U Ryffel
Eric W-F Lam
Ralf Kist
Miranda S C Wilson
Raquel Marco-Ferreres
Jan J Brosens
Leonardo L Beccari
Paola Bovolenta
Bérénice A Benayoun
Lara J Monteiro
Helma D C Schwenen
Lars Grontved
Elizabeth Wederell
Susanne Mandrup
Reiner A Veitia
Harini Chakravarthy
Pamela A Hoodless
M Michela Mancarelli
Bruce E Torbett
Alison H Banham
Sekhar P Reddy
Rebecca L Cullum
Michaela Liedtke
Mario P Tschan
Michelle Vaz
Angie Rizzino
Mariastella Zannini
Seth Frietze
Peggy J Farnham
Astrid Eijkelenboom
Philip J Brown
David Laperrière
Dominique Leprince
Tiziana de Cristofaro
Kelly L Prince
Marrit Putker
Luis del Peso
Gieri Camenisch
Roland H Wenger
Michal Mikula
Marieke Rozendaal
Sylvie Mader
Jerzy Ostrowski
Simon J Rhodes
Capucine Van Rechem
Gaylor Boulay
Sam W Z Olechnowicz
Mary B Breslin
Michael S Lan
Kyster K Nanan
Michael Wegner
Juan Hou
Rachel D Mullen
Stephanie C Colvin
Peter John Noy
Carol F Webb
Matthew E Witek
Scott Ferrell
Juliet M Daniel
Jason Park
Scott A Waldman
Daniel J Peet
Michael Taggart
Padma-Sheela Jayaraman
Julien J Karrich
Bianca Blom
Farhad Vesuna
Henriette O'Geen
Yunfu Sun
Richard M Gronostajski
Mark W Woodcroft
Margaret R Hough
Edwin Chen
G Nicholas Europe-Finner
Magdalena Karolczak-Bayatti
Jarrod Bailey
Oliver Hankinson
Venu Raman
David P LeBrun
Shyam Biswal
Christopher J Harvey
Jason P DeBruyne
John B Hogenesch
Robert F Hevner
Christophe Héligon
Xin M Luo
Marissa Cathleen Blank
Kathleen Joyce Millen
David S Sharlin
Douglas Forrest
Karin Dahlman-Wright
Chunyan Zhao
Yuriko Mishima
Satrajit Sinha
Rumela Chakrabarti
Elodie Portales-Casamar
Frances M Sladek
Philip H Bradley
Wyeth W Wasserman
University of British Columbia · CAJohns Hopkins University · USNewcastle University · GBBC Cancer Agency · CAImperial College London · GBIndiana University – Purdue University Indianapolis · USInstitute for Research in Immunology and Cancer · CAQueen's University · CAUniversity at Buffalo, State University of New York · USAmsterdam UMC Location University of Amsterdam · NLCentre National de la Recherche Scientifique · FRConsejo Superior de Investigaciones Científicas · ESFred Hutch Cancer Center · USInstitute for Experimental Endocrinology and Oncology · ITJohn Radcliffe Hospital · GBKarolinska Institutet · SELouisiana State University · USNational Institutes of Health · USScripps Research Institute · USSunnybrook Health Science Centre · CA
Funding
Molecular And Cellular Biology Training ProgramT32GM007183 · NIGMS · UNIVERSITY OF CHICAGO · PI GLICK, BENJAMIN S, RICE, PHOEBE A · 1985 to 2021
$23.9MPILOT STUDY--ACID FOG, AN EXPERIMENTAL MODELP30ES003819 · NIEHS · JOHNS HOPKINS UNIVERSITY · PI GROOPMAN, JOHN D · 1985 to 2012
$22.6MAdult Stem Cells for Therapy of Visual DisordersR24EY017540 · NEI · SCRIPPS RESEARCH INSTITUTE, THE · PI FRIEDLANDER, MARTIN · 2007 to 2011
$17.5MProduction Center for Global Mapping of Regulatory ElementsU54HG004558 · NHGRI · YALE UNIVERSITY · PI SNYDER, MICHAEL P. · 2007 to 2011
$15.4MSleep Related Mechanisms of COPD ProgressionP50HL084945 · NHLBI · JOHNS HOPKINS UNIVERSITY · PI WISE, ROBERT A. · 2007 to 2011
$15.1MOxidative Stress & Inflammation in a Human PM Nasal ChallengeP50ES015903 · NIEHS · JOHNS HOPKINS UNIVERSITY · PI BREYSSE, PATRICK N · 2007 to 2011
$12.1MIntegrated Epigenetic Maps of Human Embryonic and Adult CellsU01ES017154 · NIEHS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI COSTELLO, JOSEPH F, MARRA, MARCO ANTONIO · 2008 to 2012
$11.6MREGULATION OF LIVER SPECIFIC GENE EXPRESSIONR01DK053892 · NIDDK · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI SLADEK, FRANCES M. · 1998 to 2015
$5.3MGuanylyl Cyclase C in Blood and Colorectal CancerR01CA095026 · NCI · THOMAS JEFFERSON UNIVERSITY · PI WALDMAN, SCOTT A · 2003 to 2008
$5.1MGUANYLYL CYCLASE C AS A BIOMARKER FOR COLORECTAL CANCERR01CA075123 · NCI · THOMAS JEFFERSON UNIVERSITY · PI WALDMAN, SCOTT A. · 1998 to 2006
$5.1MCARCINOGEN ACTIVATION AND SCREENING IN VARIANT CELLSR01CA028868 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI HANKINSON, OLIVER NMN · 1985 to 2010
$3.6MHuman NRF2 Promoter Functional Polymorphisms and Acute Lung InjuryR01HL066109 · NHLBI · UNIVERSITY OF ILLINOIS AT CHICAGO · PI REDDY, SEKHAR P. · 2001 to 2012
$3.5MBritish Heart FoundationCancer Research UK 12011CIHR MOP 13-147CIHR MOP-84320CIHR MOP-89806Medical Research Council G0800202NCI NIH HHS 5R01CA097226-03NCI NIH HHS CA146033NCI NIH HHS CA45250NCI NIH HHS CA75123NCI NIH HHS CA95026NCI NIH HHS K08 CA120349NCI NIH HHS R01CA28868NEI NIH HHS R24 EY017540NHGRI NIH HHS 1U54HG004558NHLBI NIH HHS HL081205NHLBI NIH HHS HL091219NHLBI NIH HHS HL66109NHLBI NIH HHS P50HL084945NIAID NIH HHS R01-AI080564-01NICHD NIH HHS F32HD068113NICHD NIH HHS HD42024NICHD NIH HHS R01 HD42024NIDDK NIH HHS R01 DK053892NIDDK NIH HHS R01DK061436NIEHS NIH HHS ES018998NIEHS NIH HHS ES07141NIEHS NIH HHS ES11863NIEHS NIH HHS ES11893NIEHS NIH HHS P30 ES003819NIEHS NIH HHS P50ES015903NIEHS NIH HHS U01 ES017154NIGMS NIH HHS GM007377NIGMS NIH HHS GM079239NIGMS NIH HHS R01GM069417NIGMS NIH HHS R01 GM084875NIGMS NIH HHS R01GM084875NIGMS NIH HHS R01 GM088277NIGMS NIH HHS R01GM088277-01NIGMS NIH HHS T32GM007183NIMH NIH HHS R01 MH058869NIMH NIH HHS R21 MH087397NINDS NIH HHS R01NS044262NINDS NIH HHS R01NS050386NINDS NIH HHS R01 NS072441PHS HHS 044215Wellcome Trust
Abstract
Here we present the Transcription Factor Encyclopedia (TFe), a new web-based compendium of mini review articles on transcription factors (TFs) that is founded on the principles of open access and collaboration. Our consortium of over 100 researchers has collectively contributed over 130 mini review articles on pertinent human, mouse and rat TFs. Notable features of the TFe website include a high-quality PDF generator and web API for programmatic data retrieval. TFe aims to rapidly educate scientists about the TFs they encounter through the delivery of succinct summaries written and vetted by experts in the field. TFe is available at http://www.cisreg.ca/tfe.
Indexed as
Computational BiologyAccess to InformationAnimalsDatabases, ProteinEncyclopedias as TopicHumansInternetMiceRatsTranscription FactorsTranscription, GeneticTranscription Factors
Identifiers
What OpenQuestion holds
Textmetadata
LicenceCC BY
Read underepoch 390
Registered trials
None linked
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.