Evidence map›Paper›PMID 22457064›Full record

ArticleNucleic acids research2012

Evolutionary and genetic analyses of mitochondrial translation initiation factors identify the missing mitochondrial IF3 in S. cerevisiae.

Gemma C Atkinson, Anton Kuzmenko, Piotr Kamenski, Mikhail Y Vysokikh, Valentina Lakunina, Stoyan Tankov, Ekaterina Smirnova, Aksel Soosaar, Tanel Tenson, Vasili Hauryliuk

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 48 citations in OpenAlex.

  1. Transplantation ofMicrobiology (Reading, England) · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Mechanisms and regulation of protein synthesis in mitochondria.Nature reviews. Molecular cell biology · 2021
    Review
  6. The Diseased Mitoribosome.FEBS letters · 2021
    Review
  7. Article
  8. Review
  9. Cells · 2019
    Article
  10. Translatomics: The Global View of Translation.International journal of molecular sciences · 2019
    Review
  11. Emerging Roles in the Biogenesis of CytochromeFrontiers in cell and developmental biology · 2019
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Mitochondrial ribosomes in cancer.Seminars in cancer biology · 2017
    Review
  17. Article
  18. 70S-scanning initiation is a novel and frequent initiation mode of ribosomal translation in bacteria.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 2 countries.

Gemma C AtkinsonUniversity of Tartu, Institute of Technology, Tartu, Estonia. gemma.atkinson@ut.ee
Anton Kuzmenko
Piotr Kamenski
Mikhail Y Vysokikh
Valentina Lakunina
Stoyan Tankov
Ekaterina Smirnova
Aksel Soosaar
Tanel Tenson
Vasili Hauryliuk
Université de Strasbourg · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mitochondrial translation is essentially bacteria-like, reflecting the bacterial endosymbiotic ancestry of the eukaryotic organelle. However, unlike the translation system of its bacterial ancestors, mitochondrial translation is limited to just a few mRNAs, mainly coding for components of the respiratory complex. The classical bacterial initiation factors (IFs) IF1, IF2 and IF3 are universal in bacteria, but only IF2 is universal in mitochondria (mIF2). We analyse the distribution of mitochondrial translation initiation factors and their sequence features, given two well-propagated claims: first, a sequence insertion in mitochondrial IF2 (mIF2) compensates for the universal lack of IF1 in mitochondria, and secondly, no homologue of mitochondrial IF3 (mIF3) is identifiable in Saccharomyces cerevisiae. Our comparative sequence analysis shows that, in fact, the mIF2 insertion is highly variable and restricted in length and primary sequence conservation to vertebrates, while phylogenetic and in vivo complementation analyses reveal that an uncharacterized S. cerevisiae mitochondrial protein currently named Aim23p is a bona fide evolutionary and functional orthologue of mIF3. Our results highlight the lineage-specific nature of mitochondrial translation and emphasise that comparative analyses among diverse taxa are essential for understanding whether generalizations from model organisms can be made across eukaryotes.

Indexed as

Amino Acid SequenceConserved SequenceEukaryotic Initiation Factor-2Eukaryotic Initiation Factor-3Genetic Complementation TestMitochondrial ProteinsMolecular Sequence DataPhylogenySaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSequence AlignmentEukaryotic Initiation Factor-2Eukaryotic Initiation Factor-3Mitochondrial ProteinsSaccharomyces cerevisiae Proteins

Identifiers

PMID22457064
PMCPMC3401457
OpenAlexW2080785083

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.