Evidence map›Paper›PMID 22456541›Full record

ArticleObesity (Silver Spring, Md.)2012

Metabolic syndrome is linked to chromosome 7q21 and associated with genetic variants in CD36 and GNAT3 in Mexican Americans.

Vidya S Farook, Sobha Puppala, Jennifer Schneider, Sharon P Fowler, Geetha Chittoor, Thomas D Dyer, Hooman Allayee, Shelley A Cole, Rector Arya, Mary H Black and 8 more

Abstract read
In one paragraph

Article in Obesity (Silver Spring, Md.), 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 4 pooled it
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 4 syntheses or guidelines pooled it, 32 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 3 institutions in 1 country.

Vidya S FarookDepartment of Genetics, Texas Biomedical Research Institute, San Antonio, Texas, USA. vfarook@txbiomedgenetics.org
Sobha Puppala
Jennifer Schneider
Sharon P Fowler
Geetha Chittoor
Thomas D Dyer
Hooman Allayee
Shelley A Cole
Rector Arya
Mary H Black
Joanne E Curran
Laura Almasy
Thomas A Buchanan
Christopher P Jenkinson
Donna M Lehman
Richard M Watanabe
John Blangero
Ravindranath Duggirala
Texas Biomedical Research Institute · USKeck Hospital of USC · USThe University of Texas Health Science Center at San Antonio · US

Funding

Southern California Clinical and Translational Science InstituteUL1TR000130 · NCATS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI BUCHANAN, THOMAS A · 2012 to 2015
$36.0M
Genetics of Beta Cell Failure in Mexican AmericansR01DK061628 · NIDDK · UNIVERSITY OF SOUTHERN CALIFORNIA · PI BUCHANAN, THOMAS A, XIANG, ANNY H · 2003 to 2012
$10.0M
Quantitative Trait Locus Mapping in Human PedigreesR37MH059490 · NIMH · TEXAS BIOMEDICAL RESEARCH INSTITUTE · PI BLANGERO, JOHN · 2001 to 2010
$6.8M
NIDDM SUSCEPTIBILITY GENES IN MEXICAN-AMERICANSR01DK047482 · NIDDK · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI LEHMAN, DONNA M · 1993 to 2010
$5.4M
Identification of Prediabetes Genes by Expression Linkage AnalysisR01DK079195 · NIDDK · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI JENKINSON, CHRISTOPHER P · 2008 to 2013
$2.5M
GENETICS OF GALLBLADDER DISEASE IN MEXICAN AMERICANSR01DK053889 · NIDDK · UNIVERSITY OF TEXAS HLTH SCI CTR SAN ANT · PI DUGGIRALA, RAVINDRANATH · 1998 to 2011
$2.3M
Diabesity Gene Discovery at Chromosome 6q23R01DK067690 · NIDDK · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI JENKINSON, CHRISTOPHER P · 2004 to 2008
$2.3M
High Performance Computing System for Human GenomicsS10RR029392 · NCRR · TEXAS BIOMEDICAL RESEARCH INSTITUTE · PI BLANGERO, JOHN · 2010 to 2010
$2.1M
GENETIC EPIDEMIOLOGY OF NIDDM IN MEXICAN AMERICANSR01DK042273 · NIDDK · UNIVERSITY OF TEXAS HLTH SCI CTR SAN ANT · PI STERN, MICHAEL P · 1991 to 2000
$532k
NCATS NIH HHS UL1 TR000130NCRR NIH HHS S10 RR029392NIDDK NIH HHS DK42273NIDDK NIH HHS DK47482NIDDK NIH HHS DK53889NIDDK NIH HHS R01 DK047482NIDDK NIH HHS R01 DK053889NIDDK NIH HHS R01 DK061628NIDDK NIH HHS R01 DK067690NIDDK NIH HHS R01 DK079195NIMH NIH HHS R37 MH059490
6 · The paper itself

Abstract

The prevalence of metabolic syndrome (MS) has been rising alarmingly worldwide, including in the United States, but knowledge on specific genetic determinants of MS is very limited. Therefore, we planned to identify the genetic determinants of MS as defined by National Cholesterol Education Program/Adult Treatment Panel III (NCEP/ATPIII) criteria. We performed linkage screen for MS using data from 692 Mexican Americans, who participated in the San Antonio Family Diabetes/Gallbladder Study (SAFDGS). We found strong evidence for linkage of MS on chromosome 7q (LOD = 3.6, empirical P = 6.0 × 10(-5)), between markers D7S2212 and D7S821. In addition, six chromosomal regions exhibited potential evidence for linkage (LOD ≥1.2) with MS. Furthermore, we examined 29 single-nucleotide polymorphisms (SNPs) from the fatty acid translocase (FAT or CD36, 18 SNPs) gene and guanine nucleotide binding protein, α transducing 3 (GNAT3, 11 SNPs) gene, located within the 1-LOD support interval region for their association with MS and its related traits. Several SNPs were associated with MS and its related traits. Remarkably, rs11760281 in GNAT3 and rs1194197 near CD36 exhibited the strongest associations with MS (P = 0.0003, relative risk (RR) = 1.6 and P = 0.004, RR = 1.7, respectively) and several other related traits. These two variants explained ~18% of the MS linkage evidence on chromosome 7q21, and together conferred approximately threefold increase in MS risk (RR = 2.7). In conclusion, our linkage and subsequent association studies implicate a region on chromosome 7q21 to influence MS in Mexican Americans.

Indexed as

Genetic LinkagePolymorphism, Single NucleotideAdultCD36 AntigensChromosomes, Human, Pair 7FemaleGenetic Predisposition to DiseaseGenetic VariationHeterotrimeric GTP-Binding ProteinsHumansLod ScoreMaleMetabolic SyndromeMexican AmericansObesityPhenotypeCD36 AntigensGNAT1 protein, humanHeterotrimeric GTP-Binding ProteinsTransducin

Identifiers

PMID22456541
PMCPMC4287372
OpenAlexW2110210798

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.