Evidence map›Paper›PMID 22455917›Full record

ArticleBiophysical journal2012

Molecular dynamics simulations of the Cx26 hemichannel: insights into voltage-dependent loop-gating.

Taekyung Kwon, Benoît Roux, Sunhwan Jo, Jeffery B Klauda, Andrew L Harris, Thaddeus A Bargiello

Abstract read
In one paragraph

Article in Biophysical journal, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Electrical coupling and its channels.The Journal of general physiology · 2018
    Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. Review
  15. Review
  16. Review
  17. Review
  18. Mechanism of gating by calcium in connexin hemichannels.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Taekyung KwonDominic P. Purpura Department of Neuroscience, Albert Einstein College of Medicine, Bronx, New York, USA.
Benoît Roux
Sunhwan Jo
Jeffery B Klauda
Andrew L Harris
Thaddeus A Bargiello

Funding

Computational Studies of Ion Channels - Resubmission 01R01GM062342 · NIGMS · WEILL MEDICAL COLLEGE OF CORNELL UNIV · PI ROUX, BENOIT · 2001 to 2022
$8.7M
STRUCTURE/FUNCTION STUDIES OF GAP JUNCTIONSR01GM046889 · NIGMS · YESHIVA UNIVERSITY · PI BARGIELLO, THADDEUS ANDREW · 1992 to 2009
$3.8M
STRUCTURE-FUNCTION OF CONNEXIN PORESR01NS056509 · NINDS · UNIV OF MED/DENT OF NJ-NJ MEDICAL SCHOOL · PI HARRIS, ANDREW L · 2006 to 2009
$1.4M
Metal Repressor Targets and Peptide ActivatorsR43GM064889 · NIGMS · ADVANCED MICROBIAL SOLUTIONS CORPORATION · PI HARRISON, ROBERT JOSEPH · 2002 to 2002
$143k
NIGMS NIH HHS R01 GM046889NIGMS NIH HHS R01 GM062342NIGMS NIH HHS R01 GM064889NINDS NIH HHS R01 NS056509
6 · The paper itself

Abstract

Loop-gating is one of two voltage-dependent mechanisms that regulate the open probability of connexin channels. The loop-gate permeability barrier is formed by a segment of the first extracellular loop (E1) (the parahelix) and appears to be accompanied by straightening of the bend angle between E1 and the first transmembrane domain (TM1). Here, all-atom molecular dynamics simulations are used to identify and characterize interacting van der Waals and electrostatic networks that stabilize the parahelices and TM1/E1 bend angles of the open Cx26 hemichannel. Dynamic fluctuations in an electrostatic network in each subunit are directly linked to the stability of parahelix structure and TM1/E1 bend angle in adjacent subunits. The electrostatic network includes charged residues that are pore-lining and thus positioned to be voltage sensors. We propose that the transition to the closed state is initiated by voltage-driven disruption of the networks that stabilize the open-state parahelix configuration, allowing the parahelix to protrude into the channel pore to form the loop-gate barrier. Straightening of the TM1/E1 bend appears to be a consequence of the reorganization of the interacting networks that accompany the conformational change of the parahelix. The electrostatic network extends across subunit boundaries, suggesting a concerted gating mechanism.

Indexed as

Ion Channel GatingMolecular Dynamics SimulationAmino AcidsAmino Acid SubstitutionConnexin 26ConnexinsIon ChannelsMutationPermeabilityProtein Structure, SecondaryProtein Structure, TertiaryProtein SubunitsStatic ElectricityAmino AcidsConnexin 26ConnexinsIon ChannelsProtein Subunits

Identifiers

PMID22455917
PMCPMC3309406

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.