Evidence map›Paper›PMID 22451923›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2012

Mutagenesis of pairwise combinations of histone amino-terminal tails reveals functional redundancy in budding yeast.

Jung-Ae Kim, Jer-Yuan Hsu, M Mitchell Smith, C David Allis

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 26 citations in OpenAlex.

  1. Investigation of the acetic acid stress response inMicrobial cell (Graz, Austria) · 2023
    Article
  2. Review
  3. The role of histone tails in nucleosome stability: An electrostatic perspective.Computational and structural biotechnology journal · 2020
    Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Nucleosomes Regulate Base Excision Repair in Chromatin.Mutation research. Reviews in mutation research
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Jung-Ae KimLaboratory of Chromatin Biology and Epigenetics, The Rockefeller University, New York, NY 10065, USA.
Jer-Yuan Hsu
M Mitchell Smith
C David Allis
Rockefeller University · USUniversity of Virginia Health System · US

Funding

INFLUENCE OF HISTONE H1 AND HMGS ON GENE EXPRESSIONR01GM040922 · NIGMS · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI ALLIS, CHARLES DAVID · 1989 to 2022
$10.0M
HISTONE GENE EXPRESSION IN YEASTR01GM028920 · NIGMS · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI SMITH, M MITCHELL · 1985 to 2007
$2.7M
NIGMS NIH HHS GM28920NIGMS NIH HHS GM 40922NIGMS NIH HHS R01 GM028920NIGMS NIH HHS R01 GM040922
6 · The paper itself

Abstract

A large body of literature provides compelling evidence for the role of evolutionarily conserved core histone residues in various biological processes. However, site-directed mutagenesis of individual residues that are known to be sites of posttranslational modifications often does not result in clear phenotypic defects. In some cases, the combination of multiple mutations can give rise to stronger phenotypes, implying functional redundancy between distinct residues on histones. Here, we examined the "histone redundancy hypothesis" by characterizing double deletion of all pairwise combinations of amino-terminal tails (N-tails) from the four core histones encoded in budding yeast. First, we found that multiple lysine residues on the N-tails of both H2A and H4 are redundantly involved in cell viability. Second, simultaneous deletion of N-tails from H2A and H3 leads to a severe growth defect, which is correlated with perturbed gross chromatin structure in the mutant cells. Finally, by combining point mutations on H3 with deletion of the H2A N-tail, we revealed a redundant role for lysine 4 on H3 and the H2A N-tail in hydroxyurea-mediated response. Altogether, these data suggest that the N-tails of core histones share previously unrecognized, potentially redundant functions that, in some cases are different from those of the widely accepted H2A/H2B and H3/H4 dimer pairs.

Indexed as

AcetylationAmino Acid SequenceChromatinHistonesLysineMicrobial ViabilityMolecular Sequence DataMutagenesisMutant ProteinsMutationPhenotypeSaccharomycetalesSequence DeletionChromatinHistonesLysineMutant Proteins

Identifiers

PMID22451923
PMCPMC3326485
OpenAlexW2068683690

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.