Evidence map›Paper›PMID 22449497›Full record

ArticleAnalytical biochemistry2012

Scaling down the size and increasing the throughput of glycosyltransferase assays: activity changes on stem cell differentiation.

Shilpa A Patil, E V Chandrasekaran, Khushi L Matta, Abhirath Parikh, Emmanuel S Tzanakakis, Sriram Neelamegham

Open access · greenAbstract read
In one paragraph

Article in Analytical biochemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Shilpa A PatilChemical and Biological Engineering, State University of New York, Buffalo, NY 14260, USA.
E V Chandrasekaran
Khushi L Matta
Abhirath Parikh
Emmanuel S Tzanakakis
Sriram Neelamegham
University at Buffalo, State University of New York · USRoswell Park Comprehensive Cancer Center · US

Funding

Systems Biology of GlycosylationR01HL103411 · NHLBI · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI NEELAMEGHAM, SRIRAM · 2011 to 2025
$7.1M
SELECTIN MEDIATED CELL ADHESION UNDER HYDRODYNAMIC SHEARR01HL063014 · NHLBI · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI NEELAMEGHAM, SRIRAM · 2001 to 2014
$3.0M
Bioprocess for cardiac cell generation from human induced pluripotent stem cellsR01HL103709 · NHLBI · TUFTS UNIVERSITY MEDFORD · PI TZANAKAKIS, EMMANOUHL · 2011 to 2014
$1.5M
Scalable bioprocess for cardiomyocyte generation from human embryonic stem cellsR21HL092398 · NHLBI · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI TZANAKAKIS, EMMANOUHL · 2008 to 2009
$452k
An Untested Approach: Biomarkers for Colon CancerR21CA121294 · NCI · ROSWELL PARK CANCER INSTITUTE CORP · PI MATTA, KHUSHI L · 2007 to 2008
$265k
NCI NIH HHS CA121294NCI NIH HHS R21 CA121294NHLBI NIH HHS HL092398NHLBI NIH HHS HL103411NHLBI NIH HHS HL103709NHLBI NIH HHS HL63014NHLBI NIH HHS R01 HL063014NHLBI NIH HHS R01 HL103411NHLBI NIH HHS R01 HL103709NHLBI NIH HHS R21 HL092398
6 · The paper itself

Abstract

Glycosyltransferases (glycoTs) catalyze the transfer of monosaccharides from nucleotide-sugars to carbohydrate-, lipid-, and protein-based acceptors. We examined strategies to scale down and increase the throughput of glycoT enzymatic assays because traditional methods require large reaction volumes and complex chromatography. Approaches tested used (i) microarray pin printing, an appropriate method when glycoT activity was high; (ii) microwells and microcentrifuge tubes, a suitable method for studies with cell lysates when enzyme activity was moderate; and (iii) C(18) pipette tips and solvent extraction, a method that enriched reaction product when the extent of reaction was low. In all cases, reverse-phase thin layer chromatography (RP-TLC) coupled with phosphorimaging quantified the reaction rate. Studies with mouse embryonic stem cells (mESCs) demonstrated an increase in overall β(1,3)galactosyltransferase and α(2,3)sialyltransferase activity and a decrease in α(1,3)fucosyltransferases when these cells differentiate toward cardiomyocytes. Enzymatic and lectin binding data suggest a transition from Lewis(x)-type structures in mESCs to sialylated Galβ1,3GalNAc-type glycans on differentiation, with more prominent changes in enzyme activity occurring at later stages when embryoid bodies differentiated toward cardiomyocytes. Overall, simple, rapid, quantitative, and scalable glycoT activity analysis methods are presented. These use a range of natural and synthetic acceptors for the analysis of complex biological specimens that have limited availability.

Indexed as

Cell DifferentiationChromatography, Thin LayerAnimalsFucosyltransferasesGalactosyltransferasesGlycosyltransferasesLectinsMiceMyocytes, CardiacProtein BindingStem CellsFucosyltransferasesGalactosyltransferasesGlycosyltransferasesLectinsN-acetyllactosaminide alpha-1,3-galactosyltransferase

Identifiers

PMID22449497
PMCPMC3371656
OpenAlexW2011391804

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.