Evidence map›Paper›PMID 22447970›Full record

ArticleAmerican journal of respiratory cell and molecular biology2012

Integrative assessment of chlorine-induced acute lung injury in mice.

George D Leikauf, Hannah Pope-Varsalona, Vincent J Concel, Pengyuan Liu, Kiflai Bein, Annerose Berndt, Timothy M Martin, Koustav Ganguly, An Soo Jang, Kelly A Brant and 14 more

Open access · greenAbstract read
In one paragraph

Article in American journal of respiratory cell and molecular biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Genetic determinants of ammonia-induced acute lung injury in mice.American journal of physiology. Lung cellular and molecular physiology · 2021
    Article
  7. Halogen exposure injury in the developing lung.Annals of the New York Academy of Sciences · 2020
    Review
  8. Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Postexposure aerosolized heparin reduces lung injury in chlorine-exposed mice.American journal of physiology. Lung cellular and molecular physiology · 2014
    Article
  17. Article
  18. Functional genomic assessment of phosgene-induced acute lung injury in mice.American journal of respiratory cell and molecular biology · 2013
    Article
  19. Differential susceptibility of inbred mouse strains to chlorine-induced airway fibrosis.American journal of physiology. Lung cellular and molecular physiology · 2013
    Article
  20. WNT1-inducible signaling pathway protein 1 contributes to ventilator-induced lung injury.American journal of respiratory cell and molecular biology · 2012
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 5 institutions in 2 countries.

George D LeikaufDepartment of Environmental and Occupational Health, Graduate School of Public Health, University of Pittsburgh, PA 15219-3130, USA. gleikauf@pitt.edu
Hannah Pope-Varsalona
Vincent J Concel
Pengyuan Liu
Kiflai Bein
Annerose Berndt
Timothy M Martin
Koustav Ganguly
An Soo Jang
Kelly A Brant
Richard A Dopico
Swapna Upadhyay
Y P Peter Di
Qian Li
Zhen Hu
Louis J Vuga
Mario Medvedovic
Naftali Kaminski
Ming You
Danny C Alexander
Jonathan E McDunn
Daniel R Prows
Daren L Knoell
James P Fabisiak
University of Pittsburgh · USUniversity of Cincinnati · USMedical College of Wisconsin · USMetabolon (United States) · USCincinnati Children's Hospital Medical Center · US

Funding

Surrogate Biomarkers for Disease Progression in IPFP50HL084932 · NHLBI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI PILEWSKI, JOSEPH MARK · 2006 to 2010
$12.2M
Improving our mechanistic understanding of Electronic-cigarette, or vaping, product use-associated lung injuryU01ES015675 · NIEHS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI LEIKAUF, GEORGE DOUGLAS · 2006 to 2020
$8.9M
Genetic Analysis of Hyperoxia Induced Acute Lung InjuryR01HL075562 · NHLBI · CINCINNATI CHILDRENS HOSP MED CTR · PI PROWS, DANIEL R · 2004 to 2012
$3.0M
Molecular Phenotypes within and across disease boundaries in IPF and COPDR01HL095397 · NHLBI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI KAMINSKI, NAFTALI, SHAPIRO, STEVEN D · 2008 to 2011
$3.0M
Epithelial PLUNC as a determinant of Airway Mucosal Antimicrobial ActivityR01HL091938 · NHLBI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI DI, YUANPU PETER · 2008 to 2012
$2.3M
Chemoprevention of lung cancer with red ginseng extractsR01AT005522 · NCCIH · WASHINGTON UNIVERSITY · PI YOU, MING · 2009 to 2012
$1.9M
The cytoprotective role of zinc transporters in human lung epitheliaR01HL086981 · NHLBI · OHIO STATE UNIVERSITY · PI KNOELL, DAREN LEE · 2007 to 2011
$1.9M
MOLECULAR GENETICS OF LUNG TUMOR PROMOTION IN MICER01CA134433 · NCI · WASHINGTON UNIVERSITY · PI LIU, PENGYUAN, VIKIS, HARIS G. · 2009 to 2013
$1.5M
Chemoprevention of Lung Cancer with Anti-tumor BR01AT003203 · NCCIH · WASHINGTON UNIVERSITY · PI YOU, MING · 2007 to 2010
$1.5M
Growth Factor Protection in Acute Lung InjuryR01HL077763 · NHLBI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI LEIKAUF, GEORGE DOUGLAS · 2006 to 2009
$1.4M
Bayesian Mixture Modeling of Functional Genomics DataR01HG003749 · NHGRI · UNIVERSITY OF CINCINNATI · PI MEDVEDOVIC, MARIO · 2006 to 2009
$1.4M
Role of Metalloproteinases in Mucin Overproduction in COPDR01HL085655 · NHLBI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI LEIKAUF, GEORGE DOUGLAS · 2008 to 2011
$1.4M
NCCIH NIH HHS AT003203NCCIH NIH HHS AT005522NCCIH NIH HHS R01 AT003203NCCIH NIH HHS R01 AT005522NCI NIH HHS CA113793NCI NIH HHS CA134433NCI NIH HHS R01 CA113793NCI NIH HHS R01 CA134433NHGRI NIH HHS HG003749NHGRI NIH HHS R01 HG003749NHLBI NIH HHS HL075562NHLBI NIH HHS HL077763NHLBI NIH HHS HL084932NHLBI NIH HHS HL085655NHLBI NIH HHS HL086981NHLBI NIH HHS HL091938NHLBI NIH HHS HL095397NHLBI NIH HHS P50 HL084932NHLBI NIH HHS R01 HL075562NHLBI NIH HHS R01 HL077763NHLBI NIH HHS R01 HL085655NHLBI NIH HHS R01 HL086981NHLBI NIH HHS R01 HL091938NHLBI NIH HHS R01 HL095397NHLBI NIH HHS R56 HL075562NIEHS NIH HHS ES015675NIEHS NIH HHS U01 ES015675NLM NIH HHS LM009662NLM NIH HHS R21 LM009662
6 · The paper itself

Abstract

The genetic basis for the underlying individual susceptibility to chlorine-induced acute lung injury is unknown. To uncover the genetic basis and pathophysiological processes that could provide additional homeostatic capacities during lung injury, 40 inbred murine strains were exposed to chlorine, and haplotype association mapping was performed. The identified single-nucleotide polymorphism (SNP) associations were evaluated through transcriptomic and metabolomic profiling. Using ≥ 10% allelic frequency and ≥ 10% phenotype explained as threshold criteria, promoter SNPs that could eliminate putative transcriptional factor recognition sites in candidate genes were assessed by determining transcript levels through microarray and reverse real-time PCR during chlorine exposure. The mean survival time varied by approximately 5-fold among strains, and SNP associations were identified for 13 candidate genes on chromosomes 1, 4, 5, 9, and 15. Microarrays revealed several differentially enriched pathways, including protein transport (decreased more in the sensitive C57BLKS/J lung) and protein catabolic process (increased more in the resistant C57BL/10J lung). Lung metabolomic profiling revealed 95 of the 280 metabolites measured were altered by chlorine exposure, and included alanine, which decreased more in the C57BLKS/J than in the C57BL/10J strain, and glutamine, which increased more in the C57BL/10J than in the C57BLKS/J strain. Genetic associations from haplotype mapping were strengthened by an integrated assessment using transcriptomic and metabolomic profiling. The leading candidate genes associated with increased susceptibility to acute lung injury in mice included Klf4, Sema7a, Tns1, Aacs, and a gene that encodes an amino acid carrier, Slc38a4.

Indexed as

Acute Lung InjuryAnimalsChlorineChromosome MappingFemaleGene Expression ProfilingGenetic Predisposition to DiseaseHaplotypesKruppel-Like Factor 4LungMetabolomeMiceMice, Inbred C57BLPhenotypePolymorphism, Single NucleotideTranscriptomeChlorineKlf4 protein, mouseKruppel-Like Factor 4

Identifiers

PMID22447970
PMCPMC3423464
OpenAlexW2086439950

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.