Evidence map›Paper›PMID 22447605›Full record

ArticleApplied and environmental microbiology2012

Real-time PCR detection of Phaeomoniella chlamydospora and Phaeoacremonium aleophilum.

Maria Teresa Martín, Rebeca Cobos, Laura Martín, Lorena López-Enríquez

Abstract readEvaluation Study
In one paragraph

Article in Applied and environmental microbiology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Article
  3. Frontiers in plant science · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. ThePathogens (Basel, Switzerland) · 2019
    Article
  8. Molecular Effects ofPlants (Basel, Switzerland) · 2019
    Article
  9. Article
  10. Article
  11. Article
  12. Development of SCAR Primers for PCR Assay to Detect Diplodia seriata.International scholarly research notices · 2014
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Maria Teresa MartínInstituto Tecnológico Agrario de Castilla y León Zamadueñas, Valladolid, Spain. marvilte@itacyl.es
Rebeca Cobos
Laura Martín
Lorena López-Enríquez

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Phaeomoniella chlamydospora and Phaeoacremonium aleophilum are the two main fungal causal agents of Petri disease and esca. Both diseases cause significant economic losses to viticulturalists. Since no curative control measures are known, proactive defensive measures must be taken. An important aspect of current research is the development of sensitive and time-saving protocols for the detection and identification of these pathogens. Real-time PCR based on the amplification of specific sequences is now being used for the identification and quantification of many infective agents. The present work reports real-time PCR protocols for identification of P. chlamydospora and P. aleophilum. Specificity was demonstrated against purified DNA from 60 P. chlamydospora isolates or 61 P. aleophilum isolates, and no amplification was obtained with 54 nontarget DNAs. The limits of detection (i.e., DNA detectable in 95% of reactions) were around 100 fg for P. chlamydospora and 50 fg for P. aleophilum. Detection was specific and sensitive for P. chlamydospora and P. aleophilum. Spores of P. chlamydospora and P. aleophilum were detected without the need for DNA purification. The established protocols detected these fungi in wood samples after DNA purification. P. chlamydospora was detectable without DNA purification and isolation in 67% of reactions. The detection of these pathogens in wood samples has great potential for use in pathogen-free certification schemes.

Indexed as

AscomycotaDNA, FungalDNA PrimersMolecular Sequence DataPlant DiseasesReal-Time Polymerase Chain ReactionSensitivity and SpecificitySequence Analysis, DNASpecies SpecificitySpores, FungalVitisDNA, FungalDNA Primers

Identifiers

PMID22447605
PMCPMC3346403

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.