Evidence map›Paper›PMID 22446960›Full record

ArticleNature genetics2012

Bayesian inference analyses of the polygenic architecture of rheumatoid arthritis.

Eli A Stahl, Daniel Wegmann, Gosia Trynka, Javier Gutierrez-Achury, Ron Do, Benjamin F Voight, Peter Kraft, Robert Chen, Henrik J Kallberg, Fina A S Kurreeman and 11 more

Abstract read
In one paragraph

Article in Nature genetics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 236 papers, 11 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
236citing papers in PubMed, 11 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

236 citing papers in PubMed, 11 syntheses or guidelines pooled it.

  1. Pooled it
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  4. Transethnic meta-analysis identifiesAnnals of the rheumatic diseases · 2017
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  12. Trial
  13. Principled measures and estimates of trait polygenicity.American journal of human genetics · 2026
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176 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

Eli A StahlDivision of Rheumatology Immunology and Allergy, Brigham and Women's Hospital, Boston, Massachusetts, USA. estahl@rics.bwh.harvard.edu
Daniel Wegmann
Gosia Trynka
Javier Gutierrez-Achury
Ron Do
Benjamin F Voight
Peter Kraft
Robert Chen
Henrik J Kallberg
Fina A S Kurreeman
Diabetes Genetics Replication and Meta-analysis Consortium
Myocardial Infarction Genetics Consortium
Sekar Kathiresan
Cisca Wijmenga
Peter K Gregersen
Lars Alfredsson
Katherine A Siminovitch
Jane Worthington
Paul I W de Bakker
Soumya Raychaudhuri
Robert M Plenge

Funding

Genetic predictors of response to anti-TNF therapy in rheumatoid arthritisU01GM092691 · NIGMS · BRIGHAM AND WOMEN'S HOSPITAL · PI BRENNER, MICHAEL B., RAYCHAUDHURI, SOUMYA · 2010 to 2014
$7.5M
NARAC The Genetics of Rheumatoid ArthritisR01AR044422 · NIAMS · NORTH SHORE UNIVERSITY HOSPITAL · PI GREGERSEN, PETER K. · 1997 to 2011
$6.0M
Dissection of two rheumatoid arthritis risk loci from genome-wide studiesR01AR056768 · NIAMS · BRIGHAM AND WOMEN'S HOSPITAL · PI BRENNER, MICHAEL B. · 2009 to 2013
$1.9M
Bioinformatics and Population Genetics to Identify Rheumatoid Arthritis GenesK08AR055688 · NIAMS · BRIGHAM AND WOMEN'S HOSPITAL · PI RAYCHAUDHURI, SOUMYA · 2008 to 2012
$724k
Meta-analysis of GWAS data to identify novel rheumatoid arthritis risk lociR01AR057108 · NIAMS · BRIGHAM AND WOMEN'S HOSPITAL · PI PLENGE, ROBERT M · 2009 to 2010
$557k
Deep Re-Sequencing of Rheumatoid Arthritis Risk LociR01AR059648 · NIAMS · BROAD INSTITUTE, INC. · PI PLENGE, ROBERT M · 2010 to 2011
$493k
CONTINUATION OF THE GENETICS OF RHEUMATOID ARTHRITIS-264022263N01AR022263 · NIAMS · NORTH SHORE-LONG ISLAND JEWISH · 2002 to 2005
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CIHR IIN-84042CIHR MOP79321Intramural NIH HHSMedical Research Council MC_U106179471NIAMS NIH HHS K08 AR055688NIAMS NIH HHS K08AR055688-01A1NIAMS NIH HHS N01-AR-2-2263NIAMS NIH HHS R01 AR044422NIAMS NIH HHS R01 AR056768NIAMS NIH HHS R01-AR056768NIAMS NIH HHS R01 AR057108NIAMS NIH HHS R01-AR057108NIAMS NIH HHS R01 AR059648NIAMS NIH HHS R01-AR059648NIAMS NIH HHS R01-AR44422NIGMS NIH HHS U01 GM092691NIGMS NIH HHS U01-GM092691Wellcome Trust 090532
6 · The paper itself

Abstract

The genetic architectures of common, complex diseases are largely uncharacterized. We modeled the genetic architecture underlying genome-wide association study (GWAS) data for rheumatoid arthritis and developed a new method using polygenic risk-score analyses to infer the total liability-scale variance explained by associated GWAS SNPs. Using this method, we estimated that, together, thousands of SNPs from rheumatoid arthritis GWAS explain an additional 20% of disease risk (excluding known associated loci). We further tested this method on datasets for three additional diseases and obtained comparable estimates for celiac disease (43% excluding the major histocompatibility complex), myocardial infarction and coronary artery disease (48%) and type 2 diabetes (49%). Our results are consistent with simulated genetic models in which hundreds of associated loci harbor common causal variants and a smaller number of loci harbor multiple rare causal variants. These analyses suggest that GWAS will continue to be highly productive for the discovery of additional susceptibility loci for common diseases.

Indexed as

Bayes TheoremMultifactorial InheritanceArthritis, RheumatoidCardiovascular DiseasesCase-Control StudiesCeliac DiseaseDiabetes Mellitus, Type 2Genetic LociGenetic Predisposition to DiseaseGenome-Wide Association StudyHumansPolymorphism, Single Nucleotide

Identifiers

PMID22446960
PMCPMC6560362

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.