Evidence map›Paper›PMID 22445337›Full record

ArticleNeuron2012

Transcriptional architecture of the primate neocortex.

Amy Bernard, Laura S Lubbers, Keith Q Tanis, Rui Luo, Alexei A Podtelezhnikov, Eva M Finney, Mollie M E McWhorter, Kyle Serikawa, Tracy Lemon, Rebecca Morgan and 14 more

Abstract read
In one paragraph

Article in Neuron, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 144 papers.

0numbers the graph read from it
0cells of the map it votes in
144citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

144 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. eLemur: A cellular-resolution 3D atlas of the mouse lemur brain.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Review
  16. Review
  17. Gene expression in the primate orbitofrontal cortex related to anxious temperament.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  18. Article
  19. Article
  20. Article

84 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

24 authors.

Amy BernardAllen Institute for Brain Science, Seattle, WA 98103, USA.
Laura S Lubbers
Keith Q Tanis
Rui Luo
Alexei A Podtelezhnikov
Eva M Finney
Mollie M E McWhorter
Kyle Serikawa
Tracy Lemon
Rebecca Morgan
Catherine Copeland
Kimberly Smith
Vivian Cullen
Jeremy Davis-Turak
Chang-Kyu Lee
Susan M Sunkin
Andrey P Loboda
David M Levine
David J Stone
Michael J Hawrylycz
Christopher J Roberts
Allan R Jones
Daniel H Geschwind
Ed S Lein

Funding

Identification and Characterization of Asymmetrically-Expressed GenesR37MH060233 · NIMH · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI GESCHWIND, DANIEL H · 2006 to 2014
$5.3M
NIMH NIH HHS 5R37 MH060233-11NIMH NIH HHS R37 MH060233
6 · The paper itself

Abstract

Genome-wide transcriptional profiling was used to characterize the molecular underpinnings of neocortical organization in rhesus macaque, including cortical areal specialization and laminar cell-type diversity. Microarray analysis of individual cortical layers across sensorimotor and association cortices identified robust and specific molecular signatures for individual cortical layers and areas, prominently involving genes associated with specialized neuronal function. Overall, transcriptome-based relationships were related to spatial proximity, being strongest between neighboring cortical areas and between proximal layers. Primary visual cortex (V1) displayed the most distinctive gene expression compared to other cortical regions in rhesus and human, both in the specialized layer 4 as well as other layers. Laminar patterns were more similar between macaque and human compared to mouse, as was the unique V1 profile that was not observed in mouse. These data provide a unique resource detailing neocortical transcription patterns in a nonhuman primate with great similarity in gene expression to human.

Indexed as

Analysis of VarianceAnimalsFemaleHumansMacaca mulattaMaleMembrane ProteinsMiceMicroarray AnalysisMicrodissectionNeocortexNerve Tissue ProteinsNeural PathwaysNeuronsPrincipal Component AnalysisTranscription FactorsMembrane ProteinsNerve Tissue ProteinsTranscription Factors

Identifiers

PMID22445337
PMCPMC3628746

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.