ArticleThe Journal of biological chemistry2012
Lignin-degrading peroxidases from genome of selective ligninolytic fungus Ceriporiopsis subvermispora.
Article in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.
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37 citing papers in PubMed, 96 citations in OpenAlex.
- Adaptive evolution of Agaricomycetes laccases follows wood lignin diversification in plants.Applied and environmental microbiology · 2026Article
- Purification, characterization and three-dimensional structure prediction of multicopper oxidase Laccases from Trichoderma lixii FLU1 and Talaromyces pinophilus FLU12.Scientific reports · 2024Article
- The white rot basidiomyceteApplied and environmental microbiology · 2024Article
- Caatinga, Amazon and Atlantic Forest as natural sources for microbial lignocellulolytic enzymes.Archives of microbiology · 2024Article
- Lignin bioconversion based on genome mining for ligninolytic genes in Erwinia billingiae QL-Z3.Biotechnology for biofuels and bioproducts · 2024Article
- Transcriptome analysis provides insight into gamma irradiation delaying quality deterioration of postharvestFood chemistry. Molecular sciences · 2023Article
- Recent Advancements and Challenges in Lignin Valorization: Green Routes towards Sustainable Bioproducts.Molecules (Basel, Switzerland) · 2022Review
- Comparative Analysis of Enzyme Production Patterns of Lignocellulose Degradation of Two White Rot Fungi:Biomolecules · 2022Article
- Recent Advances in Synthesis and Degradation of Lignin and Lignin Nanoparticles and Their Emerging Applications in Nanotechnology.Materials (Basel, Switzerland) · 2022Review
- A plant host, Nicotiana benthamiana, enables the production and study of fungal lignin-degrading enzymes.Communications biology · 2021Article
- A Multiomic Approach to Understand HowJournal of fungi (Basel, Switzerland) · 2021Article
- Experimental and theoretical insights into the effects of pH on catalysis of bond-cleavage by the lignin peroxidase isozyme H8 from Phanerochaete chrysosporium.Biotechnology for biofuels · 2021Article
- Comparing Ligninolytic Capabilities of Bacterial and Fungal Dye-Decolorizing Peroxidases and Class-II Peroxidase-Catalases.International journal of molecular sciences · 2021Article
- Intracellular pathways for lignin catabolism in white-rot fungi.Proceedings of the National Academy of Sciences of the United States of America · 2021Article
- Metabolic Specialization and Codon Preference of Lignocellulolytic Genes in the White Rot BasidiomyceteGenes · 2020Article
- Conserved white-rot enzymatic mechanism for wood decay in the Basidiomycota genus Pycnoporus.DNA research : an international journal for rapid publication of reports on genes and genomes · 2020Article
- In silico definition of new ligninolytic peroxidase sub-classes in fungi and putative relation to fungal life style.Scientific reports · 2019Article
- Structural Motifs of Wheat Straw Lignin Differ in Susceptibility to Degradation by the White-Rot FungusACS sustainable chemistry & engineering · 2019Article
- Effects of amino acids on the lignocellulose degradation byBiotechnology for biofuels · 2019Article
- Comprehensive investigation of a dye-decolorizing peroxidase and a manganese peroxidase from Irpex lacteus F17, a lignin-degrading basidiomycete.AMB Express · 2018Article
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6 authors at 3 institutions in 2 countries.
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Abstract
The white-rot fungus Ceriporiopsis subvermispora delignifies lignocellulose with high selectivity, but until now it has appeared to lack the specialized peroxidases, termed lignin peroxidases (LiPs) and versatile peroxidases (VPs), that are generally thought important for ligninolysis. We screened the recently sequenced C. subvermispora genome for genes that encode peroxidases with a potential ligninolytic role. A total of 26 peroxidase genes was apparent after a structural-functional classification based on homology modeling and a search for diagnostic catalytic amino acid residues. In addition to revealing the presence of nine heme-thiolate peroxidase superfamily members and the unexpected absence of the dye-decolorizing peroxidase superfamily, the search showed that the C. subvermispora genome encodes 16 class II enzymes in the plant-fungal-bacterial peroxidase superfamily, where LiPs and VPs are classified. The 16 encoded enzymes include 13 putative manganese peroxidases and one generic peroxidase but most notably two peroxidases containing the catalytic tryptophan characteristic of LiPs and VPs. We expressed these two enzymes in Escherichia coli and determined their substrate specificities on typical LiP/VP substrates, including nonphenolic lignin model monomers and dimers, as well as synthetic lignin. The results show that the two newly discovered C. subvermispora peroxidases are functionally competent LiPs and also suggest that they are phylogenetically and catalytically intermediate between classical LiPs and VPs. These results offer new insight into selective lignin degradation by C. subvermispora.
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