Evidence map›Paper›PMID 22437317›Full record

ArticleThe Journal of investigative dermatology2012

Protective effect of human endogenous retrovirus K dUTPase variants on psoriasis susceptibility.

Olivia Y Lai, Haoyan Chen, Henri-Alexandre Michaud, Genki Hayashi, Peter J Kuebler, Gustaf K Hultman, Maria-Eugenia Ariza, Marshall V Williams, Mariana D Batista, Douglas F Nixon and 3 more

Open access · greenAbstract read
In one paragraph

Article in The Journal of investigative dermatology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
4.0field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 26 citations in OpenAlex.

  1. Trial
  2. Article
  3. Human Endogenous Retroviruses Expression in Autoimmunity.The Yale journal of biology and medicine · 2024
    Review
  4. Review
  5. Article
  6. Air pollution and human endogenous retrovirus methylation in the school inner-city asthma intervention study.Toxicological sciences : an official journal of the Society of Toxicology · 2023
    Article
  7. Review
  8. Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Review
  17. Review
  18. Review
  19. Immunotargeting in the management of psoriasis.ImmunoTargets and therapy · 2013
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 3 countries.

Olivia Y LaiDepartment of Dermatology, University of California, San Francisco, San Francisco, California, USA.
Haoyan Chen
Henri-Alexandre Michaud
Genki Hayashi
Peter J Kuebler
Gustaf K Hultman
Maria-Eugenia Ariza
Marshall V Williams
Mariana D Batista
Douglas F Nixon
John Foerster
Anne M Bowcock
Wilson Liao
University of California, San Francisco · USThe Ohio State University Wexner Medical Center · USUniversidade de São Paulo · BRUniversity of Dundee · GBWashington University in St. Louis · US

Funding

Genome-Wide SNP Association in PsoriasisR01AR050266 · NIAMS · WASHINGTON UNIVERSITY · PI BOWCOCK, ANNE MARY · 2007 to 2016
$5.7M
Human Endogenous Retroelements in HIV ImmunopathogenesisR01AI076059 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI NIXON, DOUGLAS F · 2009 to 2017
$3.9M
Systems Biology of PsoriasisRC1AR058681 · NIAMS · WASHINGTON UNIVERSITY · PI BOWCOCK, ANNE MARY, ZHANG, WEIXIONG · 2009 to 2010
$998k
Genetic Analysis of the TNF Pathway in PsoriasisK08AR057763 · NIAMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LIAO, WILSON · 2010 to 2014
$599k
NIAID NIH HHS R01 AI076059NIAMS NIH HHS 5RC1AR058681NIAMS NIH HHS AR050266NIAMS NIH HHS K08 AR057763NIAMS NIH HHS K08AR057763NIAMS NIH HHS R01 AR050266NIAMS NIH HHS RC1 AR058681
6 · The paper itself

Abstract

Previous genetic and functional studies have implicated the human endogenous retrovirus K (HERV-K) dUTPase located within the PSORS1 locus in the major histocompatibility complex region as a candidate psoriasis gene. Here, we describe a variant discovery and case-control association study of HERV-K dUTPase variants in 708 psoriasis cases and 349 healthy controls. Five common HERV-K dUTPase variants were found to be highly associated with psoriasis, with the strongest association occurring at the missense single-nucleotide polymorphism (SNP) rs3134774 (K158R, P=3.28 × 10(-15), odds ratio =2.36 (95% confidence interval: 1.91-2.92)). After adjusting the association of the HERV-K dUTPase variants for the potential confounding effects of HLA alleles associated with psoriasis, the HERV-K SNPs rs9264082 and rs3134774 remained significantly associated. Haplotype analysis revealed that HERV-K haplotypes containing the non-risk alleles for rs3134774 and rs9264082 significantly reduced the risk of psoriasis. Functional testing showed higher antibody responses against recombinant HERV-K dUTPase in psoriasis patients compared with controls (P<0.05), as well as higher T-cell responses against a single HERV-K dUTPase peptide (P<0.05). Our data support an independent role for the HERV-K dUTPase on psoriasis susceptibility, and suggest the need for additional studies to clarify the role of this dUTPase in the pathogenesis of psoriasis.

Indexed as

AllelesB-LymphocytesCase-Control StudiesDisease SusceptibilityEndogenous RetrovirusesHaplotypesHLA-C AntigensHumansPolymorphism, Single NucleotidePsoriasisPyrophosphatasesT-LymphocytesdUTP pyrophosphataseHLA-C AntigensPyrophosphatases

Identifiers

PMID22437317
PMCPMC3375357
OpenAlexW2082084590

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.