Evidence map›Paper›PMID 22436724›Full record

ArticleEpidemiology and infection2013

Diverse norovirus genotypes identified in sewage-polluted river water in South Africa.

J Mans, R Netshikweta, M Magwalivha, W B Van Zyl, M B Taylor

Abstract read
In one paragraph

Article in Epidemiology and infection, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

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  17. Fate of Foodborne Viruses in the "Farm to Fork" Chain of Fresh Produce.Comprehensive reviews in food science and food safety · 2015
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

J MansDepartment of Medical Virology, Faculty of Health Sciences, University of Pretoria, South Africa.
R NetshikwetaDepartment of Medical Virology, Faculty of Health Sciences, University of Pretoria, South Africa.
M MagwalivhaDepartment of Medical Virology, Faculty of Health Sciences, University of Pretoria, South Africa.
W B Van ZylDepartment of Medical Virology, Faculty of Health Sciences, University of Pretoria, South Africa.
M B TaylorDepartment of Medical Virology, Faculty of Health Sciences, University of Pretoria, South Africa.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This study aimed to assess norovirus (NoV) contamination and genotype diversity in surface water in Gauteng, South Africa. Between January 2008 and December 2010, three rivers, namely Klip, Suikerbosrant, and Rietspruit were monitored for NoV genogroup (G)I and GII. Viruses were recovered using the glass wool adsorption-elution technique and detected by real-time reverse transcription-polymerase chain reaction. From 2008 to 2010, NoVs were detected in 66% (70/106) of Klip river samples. The Rietspruit and Suikerbosrant rivers were contaminated with NoV in 95% (20/21) and 21% (5/24) of samples, respectively. NoV-positive samples comprised of 33% GI, 29% GII and 38% of both GI and GII strains. Based on partial capsid gene analysis (region C), 16 NoV genotypes (6 GI, 10 GII) were identified. The major genotypes detected were GI.4, GI.5 and GII.4. These rivers could be a potential source of NoV infection for communities using the water for domestic or recreational purposes.

Indexed as

Water MicrobiologyWater PollutionCapsid ProteinsCell LineGenetic VariationGenotypeNorovirusPhylogenyReverse Transcriptase Polymerase Chain ReactionRiversRNA, ViralSequence Analysis, DNASewageSouth AfricaCapsid ProteinsRNA, ViralSewage

Identifiers

PMID22436724
PMCPMC9152073

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.