Evidence map›Paper›PMID 22436504›Full record

ArticleBMC biotechnology2012

The Bxb1 recombination system demonstrates heritable transmission of site-specific excision in Arabidopsis.

James G Thomson, Ronald Chan, Jamison Smith, Roger Thilmony, Yuan-Yeu Yau, Yueju Wang, David W Ow

Open access · goldAbstract read
In one paragraph

Article in BMC biotechnology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 41 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Gene stacking by recombinases.Plant biotechnology journal · 2016
    Review
  10. Article
  11. Article
  12. Molecular Genetics of Mycobacteriophages.Microbiology spectrum · 2014
    Article
  13. Cross-talk between diverse serine integrases.Journal of molecular biology · 2014
    Article
  14. Advanced genetic tools for plant biotechnology.Nature reviews. Genetics · 2013
    Review
  15. Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

James G ThomsonCrop Improvement and Utilization Research Unit, Western Regional Research Center, USDA-ARS, 800 Buchanan Street, Albany, CA 94710, USA. James.Thomson@ars.usda.gov
Ronald Chan
Jamison Smith
Roger Thilmony
Yuan-Yeu Yau
Yueju Wang
David W Ow
Agricultural Research Service · USUniversity of California, Berkeley · USPlant Gene Expression Center · USWestern Regional Research Center · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe mycobacteriophage large serine recombinase Bxb1 catalyzes site-specific recombination between its corresponding attP and attB recognition sites. Previously, we and others have shown that Bxb1 has catalytic activity in various eukaryotic species including Nicotiana tabacum, Schizosaccharomyces pombe, insects and mammalian cells.

resultsIn this work, the Bxb1 recombinase gene was transformed and constitutively expressed in Arabidopsis thaliana plants harboring a chromosomally integrated attP and attB-flanked target sequence. The Bxb1 recombinase successfully excised the target sequence in a conservative manner and the resulting recombination event was heritably transmitted to subsequent generations in the absence of the recombinase transgene. In addition, we also show that Bxb1 recombinase expressing plants can be manually crossed with att-flanked target transgenic plants to generate excised progeny.

conclusionThe Bxb1 large serine recombinase performs site-specific recombination in Arabidopsis thaliana germinal tissue, producing stable lines free of unwanted DNA. The precise site-specific deletion produced by Bxb1 in planta demonstrates that this enzyme can be a useful tool for the genetic engineering of plants without selectable marker transgenes or other undesirable exogenous sequences.

Indexed as

ArabidopsisBase SequenceCloning, MolecularGenetic EngineeringMolecular Sequence DataRecombinasesRecombination, GeneticRepressor ProteinsSerineTransgenesViral Proteinsgp69 protein, Mycobacteriophage Bxb1RecombinasesRepressor ProteinsSerineViral Proteins

Identifiers

PMID22436504
PMCPMC3341217
OpenAlexW1980588692

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.