ArticleDatabase : the journal of biological databases and curation2012
Ontology searching and browsing at the Rat Genome Database.
Article in Database : the journal of biological databases and curation, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
17 citing papers in PubMed, 21 citations in OpenAlex.
- The Rat Genome Database: Genetic, Genomic, and Phenotypic Data Across Multiple Species.Current protocols · 2023Review
- Dug: a semantic search engine leveraging peer-reviewed knowledge to query biomedical data repositories.Bioinformatics (Oxford, England) · 2022Article
- Integrated curation and data mining for disease and phenotype models at the Rat Genome Database.Database : the journal of biological databases and curation · 2019Article
- A Primer for the Rat Genome Database (RGD).Methods in molecular biology (Clifton, N.J.) · 2018Article
- Bovine Genome Database: new tools for gleaning function from the Bos taurus genome.Nucleic acids research · 2016Article
- RegenBase: a knowledge base of spinal cord injury biology for translational research.Database : the journal of biological databases and curation · 2016Article
- The Rat Genome Database 2015: genomic, phenotypic and environmental variations and disease.Nucleic acids research · 2015Article
- Next generation phenotyping using the unified medical language system.JMIR medical informatics · 2014Article
- Rat Strain Ontology: structured controlled vocabulary designed to facilitate access to strain data at RGD.Journal of biomedical semantics · 2013Article
- Rat Genome Database: a unique resource for rat, human, and mouse quantitative trait locus data.Physiological genomics · 2013Article
- The Rat Genome Database 2013--data, tools and users.Briefings in bioinformatics · 2013Article
- PubTator: a web-based text mining tool for assisting biocuration.Nucleic acids research · 2013Article
- Neurocarta: aggregating and sharing disease-gene relations for the neurosciences.BMC genomics · 2013Article
- The updated RGD Pathway Portal utilizes increased curation efficiency and provides expanded pathway information.Human genomics · 2013Article
- PhenoMiner: quantitative phenotype curation at the rat genome database.Database : the journal of biological databases and curation · 2013Article
- InterMOD: integrated data and tools for the unification of model organism research.Scientific reports · 2013Article
- Analysis of disease-associated objects at the Rat Genome Database.Database : the journal of biological databases and curation · 2013Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
12 authors at 1 institution in 1 country.
Funding
Abstract
The Rat Genome Database (RGD) is the premier repository of rat genomic and genetic data and currently houses over 40 000 rat gene records, as well as human and mouse orthologs, 1857 rat and 1912 human quantitative trait loci (QTLs) and 2347 rat strains. Biological information curated for these data objects includes disease associations, phenotypes, pathways, molecular functions, biological processes and cellular components. RGD uses more than a dozen different ontologies to standardize annotation information for genes, QTLs and strains. That means a lot of time can be spent searching and browsing ontologies for the appropriate terms needed both for curating and mining the data. RGD has upgraded its ontology term search to make it more versatile and more robust. A term search result is connected to a term browser so the user can fine-tune the search by viewing parent and children terms. Most publicly available term browsers display a hierarchical organization of terms in an expandable tree format. RGD has replaced its old tree browser format with a 'driller' type of browser that allows quicker drilling up and down through the term branches, which has been confirmed by testing. The RGD ontology report pages have also been upgraded. Expanded functionality allows more choice in how annotations are displayed and what subsets of annotations are displayed. The new ontology search, browser and report features have been designed to enhance both manual data curation and manual data extraction. DATABASE URL: http://rgd.mcw.edu/rgdweb/ontology/search.html.
Indexed as
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What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.