Evidence map›Paper›PMID 22433174›Full record

ArticleBMC biochemistry2012

Alternative splicing produces structural and functional changes in CUGBP2.

Hitoshi Suzuki, Makoto Takeuchi, Ayumu Sugiyama, Ahm Khurshid Alam, Luyen Thi Vu, Yoshiharu Sekiyama, Hieu Chi Dam, Shin-Ya Ohki, Toshifumi Tsukahara

Open access · hybridAbstract read
In one paragraph

Article in BMC biochemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.8field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 17 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. The Emerging Role of Stress Granules in Hepatocellular Carcinoma.International journal of molecular sciences · 2021
    Review
  6. AU-rich element-binding proteins in colorectal cancer.World journal of gastrointestinal oncology · 2019
    Review
  7. Article
  8. Diverse regulation of 3' splice site usage.Cellular and molecular life sciences : CMLS · 2015
    Review
  9. Article
  10. Article
  11. CELFish ways to modulate mRNA decay.Biochimica et biophysica acta
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Hitoshi SuzukiCenter for Nano Materials and Technology, Japan Advanced Institute of Science and Technology, Ishikawa 923-1292, Japan. suzuki-h@jaist.ac.jp
Makoto Takeuchi
Ayumu Sugiyama
Ahm Khurshid Alam
Luyen Thi Vu
Yoshiharu Sekiyama
Hieu Chi Dam
Shin-Ya Ohki
Toshifumi Tsukahara
Japan Advanced Institute of Science and Technology · JPJapan Science and Technology Agency · JPUniversity of Rajshahi · BD

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundCELF/Bruno-like proteins play multiple roles, including the regulation of alternative splicing and translation. These RNA-binding proteins contain two RNA recognition motif (RRM) domains at the N-terminus and another RRM at the C-terminus. CUGBP2 is a member of this family of proteins that possesses several alternatively spliced exons.

resultsThe present study investigated the expression of exon 14, which is an alternatively spliced exon and encodes the first half of the third RRM of CUGBP2. The ratio of exon 14 skipping product (R3δ) to its inclusion was reduced in neuronal cells induced from P19 cells and in the brain. Although full length CUGBP2 and the CUGBP2 R3δ isoforms showed a similar effect on the inclusion of the smooth muscle (SM) exon of the ACTN1 gene, these isoforms showed an opposite effect on the skipping of exon 11 in the insulin receptor gene. In addition, examination of structural changes in these isoforms by molecular dynamics simulation and NMR spectrometry suggested that the third RRM of R3δ isoform was flexible and did not form an RRM structure.

conclusionOur results suggest that CUGBP2 regulates the splicing of ACTN1 and insulin receptor by different mechanisms. Alternative splicing of CUGBP2 exon 14 contributes to the regulation of the splicing of the insulin receptor. The present findings specifically show how alternative splicing events that result in three-dimensional structural changes in CUGBP2 can lead to changes in its biological activity.

Indexed as

ActininNerve Tissue ProteinsRNA-Binding ProteinsAlternative SplicingAnimalsCELF ProteinsChlorocebus aethiopsCOS CellsExonsGene Expression RegulationHeLa CellsHumansMiceMolecular Dynamics SimulationNeuronsProtein ConformationActininACTN1 protein, humanCELF2 protein, humanCELF ProteinsNerve Tissue ProteinsProtein IsoformsReceptor, InsulinRNA-Binding Proteins

Identifiers

PMID22433174
PMCPMC3368720
OpenAlexW1976843764

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.