Evidence map›Paper›PMID 22432021›Full record

ArticlePloS one2012

Species association of hepatitis B virus (HBV) in non-human apes; evidence for recombination between gorilla and chimpanzee variants.

Sinéad Lyons, Colin Sharp, Matthew LeBreton, Cyrille F Djoko, John A Kiyang, Felix Lankester, Tafon G Bibila, Ubald Tamoufé, Joseph Fair, Nathan D Wolfe and 1 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Viruses in sanctuary chimpanzees across Africa.American journal of primatology · 2023
    Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Origin of the HIV-1 group O epidemic in western lowland gorillas.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Theories about evolutionary origins of human hepatitis B virus in primates and humans.The Brazilian journal of infectious diseases : an official publication of the Brazilian Society of Infectious Diseases
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 3 countries.

Sinéad LyonsCentre for Immunology, Infection and Evolution, University of Edinburgh, Edinburgh, United Kingdom. S.M.K.Lyons@sms.ed.ac.uk
Colin Sharp
Matthew LeBreton
Cyrille F Djoko
John A Kiyang
Felix Lankester
Tafon G Bibila
Ubald Tamoufé
Joseph Fair
Nathan D Wolfe
Peter Simmonds
Global Viral · USLimbe Provincial Hospital · CMStanford University · USUniversity of Edinburgh · GBCentre for Immunity, Infection and Evolution · GB

Funding

NIH Director's Pioneer Award (RMI)DP1OD000370 · OD · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI WOLFE, NATHAN D · 2005 to 2009
$3.4M
Medical Research Council G0900740NIH HHS DP1 OD000370NIH HHS DP1-OD000370Wellcome Trust 095831
6 · The paper itself

Abstract

Hepatitis B virus (HBV) infections are widely distributed in humans, infecting approximately one third of the world's population. HBV variants have also been detected and genetically characterised from Old World apes; Gorilla gorilla (gorilla), Pan troglodytes (chimpanzee), Pongo pygmaeus (orang-utan), Nomascus nastusus and Hylobates pileatus (gibbons) and from the New World monkey, Lagothrix lagotricha (woolly monkey). To investigate species-specificity and potential for cross species transmission of HBV between sympatric species of apes (such as gorillas and chimpanzees in Central Africa) or between humans and chimpanzees or gorillas, variants of HBV infecting captive wild-born non-human primates were genetically characterised. 9 of 62 chimpanzees (11.3%) and two from 11 gorillas (18%) were HBV-infected (15% combined frequency), while other Old world monkey species were negative. Complete genome sequences were obtained from six of the infected chimpanzee and both gorillas; those from P. t .ellioti grouped with previously characterised variants from this subspecies. However, variants recovered from P. t. troglodytes HBV variants also grouped within this clade, indicative of transmission between sub-species, forming a paraphyletic clade. The two gorilla viruses were phylogenetically distinct from chimpanzee and human variants although one showed evidence for a recombination event with a P.t.e.-derived HBV variant in the partial X and core gene region. Both of these observations provide evidence for circulation of HBV between different species and sub-species of non-human primates, a conclusion that differs from the hypothesis if of strict host specificity of HBV genotypes.

Indexed as

Genetic VariationAnimalsBase SequenceGenome, ViralGorilla gorillaHepatitis B virusHumansPan troglodytesPhylogenyRecombination, GeneticSpecies Specificity

Identifiers

PMID22432021
PMCPMC3303819
OpenAlexW2161751521

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.