Evidence map›Paper›PMID 22431598›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2012

Small-molecule ligands bind to a distinct pocket in Ras and inhibit SOS-mediated nucleotide exchange activity.

Till Maurer, Lindsay S Garrenton, Angela Oh, Keith Pitts, Daniel J Anderson, Nicholas J Skelton, Benjamin P Fauber, Borlan Pan, Shiva Malek, David Stokoe and 10 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 319 papers.

0numbers the graph read from it
0cells of the map it votes in
319citing papers in PubMed
21.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

319 citing papers in PubMed, 623 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. The Human Omnibus of Targetable Pockets.Journal of cheminformatics · 2025
    Article
  10. Review
  11. Review
  12. Article
  13. Discovery of BI-2493, a Pan-KRAS Inhibitor ShowingJournal of medicinal chemistry · 2025
    Article
  14. ADMET-Guided Docking and GROMACS Molecular Dynamics ofPharmaceuticals (Basel, Switzerland) · 2025
    Article
  15. Methods for Controlling Small GTPase Activity.Chembiochem : a European journal of chemical biology · 2025
    Review
  16. Review
  17. Switching It up with New KRAS Inhibitors.Journal of medicinal chemistry · 2025
    Review
  18. Article
  19. Journal of the American Chemical Society · 2025
    Article
  20. Review

259 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 1 institution in 1 country.

Till MaurerStructural Biology, Genentech, Inc., One DNA Way, South San Francisco, CA 94080, USA.
Lindsay S Garrenton
Angela Oh
Keith Pitts
Daniel J Anderson
Nicholas J Skelton
Benjamin P Fauber
Borlan Pan
Shiva Malek
David Stokoe
Mary J C Ludlam
Krista K Bowman
Jiansheng Wu
Anthony M Giannetti
Melissa A Starovasnik
Ira Mellman
Peter K Jackson
Joachim Rudolph
Weiru Wang
Guowei Fang
Toxicologie, Pharmacologie et Signalisation Cellulaire · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Ras gene is frequently mutated in cancer, and mutant Ras drives tumorigenesis. Although Ras is a central oncogene, small molecules that bind to Ras in a well-defined manner and exert inhibitory effects have not been uncovered to date. Through an NMR-based fragment screen, we identified a group of small molecules that all bind to a common site on Ras. High-resolution cocrystal structures delineated a unique ligand-binding pocket on the Ras protein that is adjacent to the switch I/II regions and can be expanded upon compound binding. Structure analysis predicts that compound-binding interferes with the Ras/SOS interactions. Indeed, selected compounds inhibit SOS-mediated nucleotide exchange and prevent Ras activation by blocking the formation of intermediates of the exchange reaction. The discovery of a small-molecule binding pocket on Ras with functional significance provides a new direction in the search of therapeutically effective inhibitors of the Ras oncoprotein.

Indexed as

Binding SitesCell LineHumansLigandsModels, MolecularNuclear Magnetic Resonance, BiomolecularNucleotidesras ProteinsSon of Sevenless ProteinsLigandsNucleotidesras ProteinsSon of Sevenless Proteins

Identifiers

PMID22431598
PMCPMC3325706
OpenAlexW2146926552

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.