Evidence map›Paper›PMID 22430955›Full record

ArticleAntimicrobial agents and chemotherapy2012

Genotype and subtype profiling of PSI-7977 as a nucleotide inhibitor of hepatitis C virus.

Angela M Lam, Christine Espiritu, Shalini Bansal, Holly M Micolochick Steuer, Congrong Niu, Veronique Zennou, Meg Keilman, Yuao Zhu, Shuiyun Lan, Michael J Otto and 1 more

Registry-linked trialOpen access · bronzeAbstract read
In one paragraph

Article in Antimicrobial agents and chemotherapy, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT03283176 (Changes in Hematologic Profile, Vitamin B12 and Folic Acid Level in Cirrhotic Patients Received Sofosbuvir and Daclatasvir With or Without Ribavirin), which is not on this map. Cited by 106 papers.

0numbers the graph read from it
0cells of the map it votes in
106citing papers in PubMed
12.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT03283176 completednot on this mapstarted 2018, after this paper: background citation

Changes in Hematologic Profile, Vitamin B12 and Folic Acid Level in Cirrhotic Patients Received Sofosbuvir and Daclatasvir With or Without Ribavirin

TypeobservationalSponsorAssiut UniversityRan2018 to 2020Enrolled50ConditionsLiver Cirrhoses, Chronic Hepatitis c, Directly Acting AntiviralsArmsVitamin B12 and Folic Acid
3 · Its place in the literature

Who cites it

106 citing papers in PubMed, 241 citations in OpenAlex.

  1. Trial
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  3. Infrequent development of resistance in genotype 1-6 hepatitis C virus-infected subjects treated with sofosbuvir in phase 2 and 3 clinical trials.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2014
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46 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Angela M LamPharmasset, Inc, Princeton, New Jersey, USA. angela.lam.al1@roche.com
Christine Espiritu
Shalini Bansal
Holly M Micolochick Steuer
Congrong Niu
Veronique Zennou
Meg Keilman
Yuao Zhu
Shuiyun Lan
Michael J Otto
Phillip A Furman

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

PSI-7977, a prodrug of 2'-F-2'-C-methyluridine monophosphate, is the purified diastereoisomer of PSI-7851 and is currently being investigated in phase 3 clinical trials for the treatment of hepatitis C. In this study, we profiled the activity of PSI-7977 and its ability to select for resistance using a number of different replicon cells. Results showed that PSI-7977 was active against genotype (GT) 1a, 1b, and 2a (strain JFH-1) replicons and chimeric replicons containing GT 2a (strain J6), 2b, and 3a NS5B polymerase. Cross-resistance studies using GT 1b replicons confirmed that the S282T change conferred resistance to PSI-7977. Subsequently, we evaluated the ability of PSI-7977 to select for resistance using GT 1a, 1b, and 2a (JFH-1) replicon cells. S282T was the common mutation selected among all three genotypes, but while it conferred resistance to PSI-7977 in GT 1a and 1b, JFH-1 GT 2a S282T showed only a very modest shift in 50% effective concentration (EC(50)) for PSI-7977. Sequence analysis of the JFH-1 NS5B region indicated that additional amino acid changes were selected both prior to and after the emergence of S282T. These include T179A, M289L, I293L, M434T, and H479P. Residues 179, 289, and 293 are located within the finger and palm domains, while 434 and 479 are located on the surface of the thumb domain. Data from the JFH-1 replicon variants showed that amino acid changes within the finger and palm domains together with S282T were required to confer resistance to PSI-7977, while the mutations on the thumb domain serve to enhance the replication capacity of the S282T replicons.

Indexed as

Antiviral AgentsCell LineGenotypeHepacivirusHumansRepliconSofosbuvirUridine MonophosphateVirus ReplicationAntiviral AgentsSofosbuvirUridine Monophosphate

Identifiers

PMID22430955
PMCPMC3370800
OpenAlexW2141839071

What OpenQuestion holds

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.