Evidence map›Paper›PMID 22428019›Full record

ArticlePloS one2012

A functional genomics approach to establish the complement of carbohydrate transporters in Streptococcus pneumoniae.

Alessandro Bidossi, Laura Mulas, Francesca Decorosi, Leonarda Colomba, Susanna Ricci, Gianni Pozzi, Josef Deutscher, Carlo Viti, Marco Rinaldo Oggioni

Abstract read
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 114 papers.

0numbers the graph read from it
0cells of the map it votes in
114citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

114 citing papers in PubMed.

  1. Article
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  14. Identification ofJournal of bacteriology · 2023
    Article
  15. Glucose Transport inMicroorganisms · 2023
    Review
  16. Article
  17. Role of Metabolic Adaptation ofPathogens (Basel, Switzerland) · 2023
    Review
  18. Article
  19. Combining the In Silico and In Vitro Assays to IdentifyPharmaceuticals (Basel, Switzerland) · 2023
    Article
  20. Carbon source-dependent capsule thickness regulation inFrontiers in cellular and infection microbiology · 2023
    Article

54 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Alessandro BidossiLab Microbiologia Molecolare e Biotecnologia, Dip Biologia Molecolare, Università di Siena, Siena, Italy.
Laura Mulas
Francesca Decorosi
Leonarda Colomba
Susanna Ricci
Gianni Pozzi
Josef Deutscher
Carlo Viti
Marco Rinaldo Oggioni

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The aerotolerant anaerobe Streptococcus pneumoniae is part of the normal nasopharyngeal microbiota of humans and one of the most important invasive pathogens. A genomic survey allowed establishing the occurrence of twenty-one phosphotransferase systems, seven carbohydrate uptake ABC transporters, one sodium:solute symporter and a permease, underlining an exceptionally high capacity for uptake of carbohydrate substrates. Despite high genomic variability, combined phenotypic and genomic analysis of twenty sequenced strains did assign the substrate specificity only to two uptake systems. Systematic analysis of mutants for most carbohydrate transporters enabled us to assign a phenotype and substrate specificity to twenty-three transport systems. For five putative transporters for galactose, pentoses, ribonucleosides and sulphated glycans activity was inferred, but not experimentally confirmed and only one transport system remains with an unknown substrate and lack of any functional annotation. Using a metabolic approach, 80% of the thirty-two fermentable carbon substrates were assigned to the corresponding transporter. The complexity and robustness of sugar uptake is underlined by the finding that many transporters have multiple substrates, and many sugars are transported by more than one system. The present work permits to draw a functional map of the complete arsenal of carbohydrate utilisation proteins of pneumococci, allows re-annotation of genomic data and might serve as a reference for related species. These data provide tools for specific investigation of the roles of the different carbon substrates on pneumococcal physiology in the host during carriage and invasive infection.

Indexed as

Carbohydrate MetabolismGenetic VariationPhenotypeAmino Acid SequenceATP-Binding Cassette TransportersGenome, BacterialGenomicsMicroarray AnalysisMolecular Sequence DataPhosphotransferasesStreptococcus pneumoniaeSubstrate SpecificityATP-Binding Cassette TransportersPhosphotransferases

Identifiers

PMID22428019
PMCPMC3302838

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.