Evidence map›Paper›PMID 22427824›Full record

ArticlePloS one2012

Regulation of the vapBC-1 toxin-antitoxin locus in nontypeable Haemophilus influenzae.

Susan D Cline, Sehresh Saleem, Dayle A Daines

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.6field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Susan D ClineDivision of Basic Medical Sciences, Mercer University School of Medicine, Macon, Georgia, United States of America.
Sehresh Saleem
Dayle A Daines
Mercer University · USUniversity of Padua · IT

Funding

Metabolic regulation in otitis mediaR01DC010187 · NIDCD · OLD DOMINION UNIVERSITY · PI DAINES, DAYLE ANITA · 2009 to 2012
$1.3M
NIDCD NIH HHS DC010187NIDCD NIH HHS R01 DC010187
6 · The paper itself

Abstract

Nontypeable Haemophilus influenzae (NTHi) are human-adapted commensal bacteria that can cause a number of chronic mucosal infections, including otitis media and bronchitis. One way for these organisms to survive antibiotic therapy and cause recurrent disease is to stop replicating, as most antimicrobials target essential biosynthetic pathways. Toxin-antitoxin (TA) gene pairs have been shown to facilitate entry into a reversible bacteriostatic state. Characteristically, these operons encode a protein toxin and an antitoxin that associate following translation to form a nontoxic complex, which then binds to and regulates the cognate TA promoter. Under stressful conditions, the labile antitoxin is degraded and the complex disintegrates, freeing the stable toxin to facilitate growth arrest. How these events affected the regulation of the TA locus, as well as how the transcription of the operon was subsequently returned to its normal state upon resumption of growth, was not fully understood. Here we show that expression of the NTHi vapBC-1 TA locus is repressed by a complex of VapB-1 and VapC-1 under conditions favorable for growth, and activated by the global transactivator Factor for Inversion Stimulation (Fis) upon nutrient upshift from stationary phase. Further, we demonstrate for the first time that the VapC-1 toxin alone can bind to its cognate TA locus control region and that the presence of VapB-1 directs the binding of the VapBC-1 complex in the transcriptional regulation of vapBC-1.

Indexed as

AntitoxinsBacterial ProteinsBacterial ToxinsCloning, MolecularDNA-Binding ProteinsDNA PrimersElectrophoretic Mobility Shift AssayGene Expression Regulation, BacterialHaemophilus influenzaeMembrane GlycoproteinsMultiprotein ComplexesMutagenesis, Site-DirectedPromoter Regions, GeneticReal-Time Polymerase Chain ReactionAntitoxinsBacterial ProteinsBacterial ToxinsDNA-Binding ProteinsDNA PrimersMembrane GlycoproteinsMultiprotein ComplexesVapB protein, Bacteria

Identifiers

PMID22427824
PMCPMC3302801
OpenAlexW2063175121

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.