Evidence map›Paper›PMID 22427741›Full record

ArticlePLoS biology2012

Combinatorial activation and repression by seven transcription factors specify Drosophila odorant receptor expression.

Shadi Jafari, Liza Alkhori, Alexander Schleiffer, Anna Brochtrup, Thomas Hummel, Mattias Alenius

Open access · goldAbstract read
In one paragraph

Article in PLoS biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 101 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Shadi JafariDepartment of Clinical and Experimental Medicine, Linköping University, Linköping, Sweden.
Liza Alkhori
Alexander Schleiffer
Anna Brochtrup
Thomas Hummel
Mattias Alenius
Linköping University · SEUniversity of Vienna · ATResearch Institute of Molecular Pathology · AT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The mechanism that specifies olfactory sensory neurons to express only one odorant receptor (OR) from a large repertoire is critical for odor discrimination but poorly understood. Here, we describe the first comprehensive analysis of OR expression regulation in Drosophila. A systematic, RNAi-mediated knock down of most of the predicted transcription factors identified an essential function of acj6, E93, Fer1, onecut, sim, xbp1, and zf30c in the regulation of more than 30 ORs. These regulatory factors are differentially expressed in antennal sensory neuron classes and specifically required for the adult expression of ORs. A systematic analysis reveals not only that combinations of these seven factors are necessary for receptor gene expression but also a prominent role for transcriptional repression in preventing ectopic receptor expression. Such regulation is supported by bioinformatics and OR promoter analyses, which uncovered a common promoter structure with distal repressive and proximal activating regions. Thus, our data provide insight into how combinatorial activation and repression can allow a small number of transcription factors to specify a large repertoire of neuron classes in the olfactory system.

Indexed as

Gene Expression Regulation, DevelopmentalAnimalsArthropod AntennaeBasic Helix-Loop-Helix ProteinsBinding SitesComputational BiologyDNA-Binding ProteinsDrosophilaDrosophila ProteinsGene Knockdown TechniquesGenes, InsectMutagenesis, InsertionalNerve Tissue ProteinsNeuronsNuclear ProteinsNucleotide Motifsacj6 protein, DrosophilaBasic Helix-Loop-Helix ProteinsDNA-Binding ProteinsDrosophila ProteinsEip93F protein, DrosophilaNerve Tissue ProteinsNuclear ProteinsPOU Domain FactorsReceptors, Odorantsim protein, DrosophilaTranscription FactorsXbp1 protein, Drosophila

Identifiers

PMID22427741
PMCPMC3302810
OpenAlexW2057794075

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.