Evidence map›Paper›PMID 22427630›Full record

ArticleJournal of bacteriology2012

Mfd is required for rapid recovery of transcription following UV-induced DNA damage but not oxidative DNA damage in Escherichia coli.

Brandy J Schalow, Charmain T Courcelle, Justin Courcelle

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 38 citations in OpenAlex.

  1. Article
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  5. Review
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  9. Article
  10. Evaluation of E. coli inhibition by plain and polymer-coated silver nanoparticles.Revista do Instituto de Medicina Tropical de Sao Paulo · 2018
    Article
  11. Review
  12. Transcription-coupled repair: an update.Archives of toxicology · 2016
    Review
  13. Article
  14. Article
  15. Article
  16. Rethinking transcription coupled DNA repair.Current opinion in microbiology · 2015
    Review
  17. UvrD helicase: an old dog with a new trick: how one step backward leads to many steps forward.BioEssays : news and reviews in molecular, cellular and developmental biology · 2015
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Brandy J SchalowDepartment of Biology, Portland State University, Portland, Oregon, USA. brans@pdx.edu
Charmain T Courcelle
Justin Courcelle
Portland State University · US

Funding

R15 AREA: Replication in the Presence of Oxidative DNA damageR15ES021594 · NIEHS · PORTLAND STATE UNIVERSITY · PI COURCELLE, JUSTIN · 2012 to 2012
$437k
Transcription-coupled repair of Oxidative DNA damage in vivoR21ES018940 · NIEHS · PORTLAND STATE UNIVERSITY · PI COURCELLE, JUSTIN · 2010 to 2011
$398k
NIEHS NIH HHS R15 ES021594NIEHS NIH HHS R15ES021594NIEHS NIH HHS R21 ES018940NIEHS NIH HHS R21ES018940
6 · The paper itself

Abstract

Transcription-coupled repair (TCR) is a cellular process by which some forms of DNA damage are repaired more rapidly from transcribed strands of active genes than from nontranscribed strands or the overall genome. In humans, the TCR coupling factor, CSB, plays a critical role in restoring transcription following both UV-induced and oxidative DNA damage. It also contributes indirectly to the global repair of some forms of oxidative DNA damage. The Escherichia coli homolog, Mfd, is similarly required for TCR of UV-induced lesions. However, its contribution to the restoration of transcription and to global repair of oxidative damage has not been examined. Here, we report the first direct study of transcriptional recovery following UV-induced and oxidative DNA damage in E. coli. We observed that mutations in mfd or uvrA reduced the rate that transcription recovered following UV-induced damage. In contrast, no difference was detected in the rate of transcription recovery in mfd, uvrA, fpg, nth, or polB dinB umuDC mutants relative to wild-type cells following oxidative damage. mfd mutants were also fully resistant to hydrogen peroxide (H(2)O(2)) and removed oxidative lesions from the genome at rates comparable to wild-type cells. The results demonstrate that Mfd promotes the rapid recovery of gene expression following UV-induced damage in E. coli. In addition, these findings imply that Mfd may be functionally distinct from its human CSB homolog in that it does not detectably contribute to the recovery of gene expression or global repair following oxidative damage.

Indexed as

Ultraviolet RaysBacterial ProteinsDNA, BacterialDNA DamageDNA RepairEscherichia coliGene Expression Regulation, BacterialHydrogen PeroxideMutationOxidative StressRNA, BacterialTranscription FactorsTranscription, GeneticBacterial ProteinsDNA, BacterialHydrogen PeroxideRNA, BacterialTranscription Factorstranscription repair coupling factor protein, Bacteria

Identifiers

PMID22427630
PMCPMC3347188
OpenAlexW2002700555

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.