Evidence map›Paper›PMID 22424472›Full record

ArticleBMC plant biology2012

Functional interconnections of HY1 with MYC2 and HY5 in Arabidopsis seedling development.

Babu Rajendra V Prasad, Selva V Kumar, Ashis Nandi, Sudip Chattopadhyay

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
4.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 31 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Babu Rajendra V PrasadNational Institute of Plant Genome Research, New Delhi, India.
Selva V Kumar
Ashis Nandi
Sudip Chattopadhyay
National Institute of Plant Genome Research · INJawaharlal Nehru University · INNational Institute of Technology Durgapur · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Arabidopsis seedling development is controlled by many regulatory genes involved in multiple signaling pathways. The functional relationships of these genes working in multiple signaling cascades have started to be unraveled. Arabidopsis HY1/HO1 is a rate-limiting enzyme involved in biosynthesis of phytochrome chromophore. HY5 (a bZIP protein) promotes photomorphogenesis, however ZBF1/MYC2 (a bHLH protein) works as a negative regulator of photomorphogenic growth and light regulated gene expression. Further, MYC2 and HY1 have been shown to play important roles in jasmonic acid (JA) signaling pathways. Here, we show the genetic interactions of HY1 with two key transcription factor genes of light signaling, HY5 and MYC2, in Arabidopsis seedling development. Our studies reveal that although HY1 acts in an additive manner with HY5, it is epistatic to MYC2 in light-mediated seedling growth and gene expression. This study further demonstrates that HY1 additively or synergistically functions with HY5, however it works upstream to MYC2 in JA signaling pathways. Taken together, this study demonstrates the functional interrelations of HY1, MYC2 and HY5 in light and JA signaling pathways.

Indexed as

AnthocyaninsArabidopsisArabidopsis ProteinsBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsBasic-Leucine Zipper Transcription FactorsChlorophyllCloning, MolecularCyclopentanesEpistasis, GeneticEthyl MethanesulfonateGene Expression Regulation, PlantGenes, PlantGenetic Complementation TestLightMutationNuclear ProteinsAnthocyaninsArabidopsis ProteinsBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsBasic-Leucine Zipper Transcription FactorsChlorophyllCyclopentanesEthyl MethanesulfonateHY5 protein, Arabidopsisjasmonic acidMYC2 protein, ArabidopsisNuclear ProteinsOxylipins

Identifiers

PMID22424472
PMCPMC3353174
OpenAlexW1977584467

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.