Evidence map›Paper›PMID 22423970›Full record

ArticleCell host & microbe2012

Cofactors required for TLR7- and TLR9-dependent innate immune responses.

Chih-Yuan Chiang, Alex Engel, Amanda M Opaluch, Irene Ramos, Ana M Maestre, Ismael Secundino, Paul D De Jesus, Quy T Nguyen, Genevieve Welch, Ghislain M C Bonamy and 7 more

Open access · bronzeAbstract read
In one paragraph

Article in Cell host & microbe, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 43 citations in OpenAlex.

  1. Trial
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Kinase inhibition in autoimmunity and inflammation.Nature reviews. Drug discovery · 2021
    Review
  8. B Cell αv Integrins Regulate TLR-Driven Autoimmunity.Journal of immunology (Baltimore, Md. : 1950) · 2020
    Article
  9. Ubiquitination of TLR3 by TRIM3 signals its ESCRT-mediated trafficking to the endolysosomes for innate antiviral response.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  10. Article
  11. Diagnosis of gluten-related enteropathy in a newborn: how and when?Gastroenterology and hepatology from bed to bench · 2019
    Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Viruses Seen by Our Cells: The Role of Viral RNA Sensors.Journal of immunology research · 2018
    Review
  17. Article
  18. AThe EMBO journal · 2017
    Article
  19. Article
  20. Nucleic acid-sensing TLRs: trafficking and regulation.Current opinion in immunology · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 5 institutions in 1 country.

Chih-Yuan ChiangInfectious and Inflammatory Disease Center, Sanford-Burnham Medical Research Institute, La Jolla, CA 92037, USA.
Alex Engel
Amanda M Opaluch
Irene Ramos
Ana M Maestre
Ismael Secundino
Paul D De Jesus
Quy T Nguyen
Genevieve Welch
Ghislain M C Bonamy
Loren J Miraglia
Anthony P Orth
Victor Nizet
Ana Fernandez-Sesma
Yingyao Zhou
Gregory M Barton
Sumit K Chanda
Genomics Institute of the Novartis Research Foundation · USSanford Burnham Prebys Medical Discovery Institute · USIcahn School of Medicine at Mount Sinai · USUniversity of California, Berkeley · USUniversity of California, San Diego · US

Funding

SYNTHETIC SYSTEMSP50GM085764 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HASTY, JEFF M, IDEKER, TREY · 2010 to 2018
$23.3M
Molecular Virology and Systems Biology Screening CoreP01AI090935 · NIAID · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI CHANDA, SUMIT K · 2010 to 2014
$20.4M
The cell biology of Toll-like receptor 9: a mechanism to prevent autoimmunityR01AI072429 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI Gregory M Barton · 2008 to 2026
$7.6M
GAS Switch from Colonizing Bacterium to Invasive PathogenR01AI077780 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI NIZET, VICTOR · 2008 to 2019
$3.8M
MODULATION OF INNATE AND ADAPTIVE IMMUNITY BY DENGUE VIRUSR01AI073450 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI FERNANDEZ-SESMA, ANA · 2008 to 2017
$3.3M
Identification of age-related mediators of pro-inflammatory signalingF31AG032171 · NIA · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI OPALUCH, AMANDA · 2008 to 2010
$91k
NIAID NIH HHS AI77780NIAID NIH HHS P01 AI090935NIAID NIH HHS R01 AI072429NIAID NIH HHS R01 AI073450NIAID NIH HHS R01 AI077780NIA NIH HHS F31 AG032171NIGMS NIH HHS P50 GM085764NIGMS NIH HHS P50GM085764
6 · The paper itself

Abstract

Pathogens commonly utilize endocytic pathways to gain cellular access. The endosomal pattern recognition receptors TLR7 and TLR9 detect pathogen-encoded nucleic acids to initiate MyD88-dependent proinflammatory responses to microbial infection. Using genome-wide RNAi screening and integrative systems-based analysis, we identify 190 cofactors required for TLR7- and TLR9-directed signaling responses. A set of cofactors were crossprofiled for their activities downstream of several immunoreceptors and then functionally mapped based on the known architecture of NF-κB signaling pathways. Protein complexes and pathways involved in ubiquitin-protein ligase activities, sphingolipid metabolism, chromatin modifications, and ancient stress responses were found to modulate innate recognition of endosomal nucleic acids. Additionally, hepatocyte growth factor-regulated tyrosine kinase substrate (HRS) was characterized as necessary for ubiquitin-dependent TLR9 targeting to the endolysosome. Proteins and pathways identified here should prove useful in delineating strategies to manipulate innate responses for treatment of autoimmune disorders and microbial infection.

Indexed as

AnimalsChick EmbryoComputer SimulationEndosomal Sorting Complexes Required for TransportEndosomesGene Expression ProfilingGene Knockdown TechniquesGene Regulatory NetworksHEK293 CellsHumansImmunity, InnateIntracellular Signaling Peptides and ProteinsModels, BiologicalMyeloid Differentiation Factor 88PhosphoproteinsProtein TransportEndosomal Sorting Complexes Required for Transporthepatocyte growth factor-regulated tyrosine kinase substrateIntracellular Signaling Peptides and ProteinsMYD88 protein, humanMyeloid Differentiation Factor 88PhosphoproteinsTLR7 protein, humanTLR9 protein, humanToll-Like Receptor 7Toll-Like Receptor 9

Identifiers

PMID22423970
PMCPMC3310399
OpenAlexW1998448154

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.