ArticlePlant physiology2012
Dynamic nucleotide-binding site and leucine-rich repeat-encoding genes in the grass family.
Article in Plant physiology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 64 papers.
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Who cites it
64 citing papers in PubMed, 133 citations in OpenAlex.
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- Genetics of chilling response at early growth stage in rice: a recessive gene for tolerance and importance of acclimation.AoB PLANTS · 2023Article
- Hyper non-CG methylation of expanded plant disease resistance NLR genes.Plant cell reports · 2023Article
- Comparative-genomic analysis reveals dynamic NLR gene loss and gain across Apiaceae species.Frontiers in genetics · 2023Article
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- Broad-spectrum fungal resistance in sorghum is conferred through the complex regulation of an immune receptor gene embedded in a natural antisense transcript.The Plant cell · 2022Article
- Two genomic regions of a sodium azide induced rice mutant confer broad-spectrum and durable resistance to blast disease.Rice (New York, N.Y.) · 2022Article
- Rice functional genomics: decades' efforts and roads ahead.Science China. Life sciences · 2022Review
- Genome-wide comparative analysis of the nucleotide-binding site-encoding genes in fourFrontiers in plant science · 2022Article
- Genome-Wide Analysis ofFrontiers in genetics · 2022Article
- Hypersensitivity to triforine in lettuce is triggered by a TNL gene through the disease-resistance pathway.Plant biotechnology journal · 2021Article
- Expression of an Antiviral GeneViruses · 2021Article
- Comparison and evolutionary analysis of Brassica nucleotide binding site leucine rich repeat (NLR) genes and importance for disease resistance breeding.The plant genome · 2021Review
- Evolution ofFrontiers in plant science · 2021Article
4 more citing papers are in PubMed but not listed here.
Corrections and comments
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Authors and funding
9 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The proper use of resistance genes (R genes) requires a comprehensive understanding of their genomics and evolution. We analyzed genes encoding nucleotide-binding sites and leucine-rich repeats in the genomes of rice (Oryza sativa), maize (Zea mays), sorghum (Sorghum bicolor), and Brachypodium distachyon. Frequent deletions and translocations of R genes generated prevalent presence/absence polymorphism between different accessions/species. The deletions were caused by unequal crossover, homologous repair, nonhomologous repair, or other unknown mechanisms. R gene loci identified from different genomes were mapped onto the chromosomes of rice cv Nipponbare using comparative genomics, resulting in an integrated map of 495 R loci. Sequence analysis of R genes from the partially sequenced genomes of an African rice cultivar and 10 wild accessions suggested that there are many additional R gene lineages in the AA genome of Oryza. The R genes with chimeric structures (termed type I R genes) are diverse in different rice accessions but only account for 5.8% of all R genes in the Nipponbare genome. In contrast, the vast majority of R genes in the rice genome are type II R genes, which are highly conserved in different accessions. Surprisingly, pseudogene-causing mutations in some type II lineages are often conserved, indicating that their conservations were not due to their functions. Functional R genes cloned from rice so far have more type II R genes than type I R genes, but type I R genes are predicted to contribute considerable diversity in wild species. Type I R genes tend to reduce the microsynteny of their flanking regions significantly more than type II R genes, and their flanking regions have slightly but significantly lower G/C content than those of type II R genes.
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