Evidence map›Paper›PMID 22419167›Full record

ArticleGenome research2012

The evolution of African great ape subtelomeric heterochromatin and the fusion of human chromosome 2.

Mario Ventura, Claudia R Catacchio, Saba Sajjadian, Laura Vives, Peter H Sudmant, Tomas Marques-Bonet, Tina A Graves, Richard K Wilson, Evan E Eichler

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Genome research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
  2. Article
  3. Origin and evolution of acrocentric chromosomes in human and great apes.bioRxiv : the preprint server for biology · 2025
    Article
  4. Epigenetic and evolutionary features of ape subterminal heterochromatin.bioRxiv : the preprint server for biology · 2025
    Article
  5. Article
  6. Complete sequencing of ape genomes.bioRxiv : the preprint server for biology · 2024
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 3 countries.

Mario VenturaDepartment of Genome Sciences, University of Washington School of Medicine, Seattle, WA 98195, USA
Claudia R Catacchio
Saba Sajjadian
Laura Vives
Peter H Sudmant
Tomas Marques-Bonet
Tina A Graves
Richard K Wilson
Evan E Eichler
University of Washington · USWashington University in St. Louis · USHoward Hughes Medical Institute · USInstitució Catalana de Recerca i Estudis Avançats · ES

Funding

Large Scale Genome SequencingU54HG003079 · NHGRI · WASHINGTON UNIVERSITY · PI DUTCHER, SUSAN K · 2004 to 2016
$445.7M
Sequence and Assembly of Segmental DuplicationsR01HG002385 · NHGRI · UNIVERSITY OF WASHINGTON · PI Evan Eichler · 2001 to 2026
$13.3M
MECHANISM &INSTABILITY OF PERICENTROMERIC DUPLICATIONSR01GM058815 · NIGMS · UNIVERSITY OF WASHINGTON · PI EICHLER, EVAN · 1999 to 2010
$2.9M
Howard Hughes Medical InstituteNHGRI NIH HHS HG002385NHGRI NIH HHS R01 HG002385NHGRI NIH HHS U54 HG003079NIGMS NIH HHS GM058815NIGMS NIH HHS R01 GM058815
6 · The paper itself

Abstract

Chimpanzee and gorilla chromosomes differ from human chromosomes by the presence of large blocks of subterminal heterochromatin thought to be composed primarily of arrays of tandem satellite sequence. We explore their sequence composition and organization and show a complex organization composed of specific sets of segmental duplications that have hyperexpanded in concert with the formation of subterminal satellites. These regions are highly copy number polymorphic between and within species, and copy number differences involving hundreds of copies can be accurately estimated by assaying read-depth of next-generation sequencing data sets. Phylogenetic and comparative genomic analyses suggest that the structures have arisen largely independently in the two lineages with the exception of a few seed sequences present in the common ancestor of humans and African apes. We propose a model where an ancestral human-chimpanzee pericentric inversion and the ancestral chromosome 2 fusion both predisposed and protected the chimpanzee and human genomes, respectively, to the formation of subtelomeric heterochromatin. Our findings highlight the complex interplay between duplicated sequences and chromosomal rearrangements that rapidly alter the cytogenetic landscape in a short period of evolutionary time.

Indexed as

Chromosomes, Human, Pair 2Evolution, MolecularModels, GeneticAmino Acid SequenceAnimalsCytogenetic AnalysisDNA, SatelliteGene DuplicationGorilla gorillaHeterochromatinHominidaeHumansMolecular Sequence DataPan troglodytesPhylogenyTelomereDNA, SatelliteHeterochromatin

Identifiers

PMID22419167
PMCPMC3371704
OpenAlexW2116003061

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.