Evidence map›Paper›PMID 22418839›Full record

ArticleThe protein journal2012

Crystal structure of Human ASB9-2 and substrate-recognition of CKB.

Xiangwei Fei, Xing Gu, Shilong Fan, Zhenxing Yang, Fan Li, Cheng Zhang, Weimin Gong, Yumin Mao, Chaoneng Ji

Abstract read
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Article in The protein journal, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.4field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Targeted protein degradation: expanding the toolbox.Nature reviews. Drug discovery · 2019
    Article
  3. Article
  4. Context-dependent prediction of protein complexes by SiComPre.NPJ systems biology and applications · 2018
    Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Xiangwei FeiState Key Laboratory of Genetic Engineering, School of Life Sciences, Fudan University, Shanghai, People's Republic of China.
Xing Gu
Shilong Fan
Zhenxing Yang
Fan Li
Cheng Zhang
Weimin Gong
Yumin Mao
Chaoneng Ji
Fudan University · CNInstitute of Biophysics · CNState Key Laboratory of Genetic EngineeringChinese Academy of Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Human ankyrin repeat and suppressor of cytokine signaling box protein 9 (hASB9) is a specific substrate-recognition subunit of an elongin C-cullin-SOCS box E3 ubiquitin ligase complex. It recognizes its substrate, brain type creatine kinase (CKB), using the ankyrin repeat domain; and facilitates the polyubiquitination of CKB to mediate proteasomal degradation through the SOCS box domain. HASB9-2 is an isoform of hASB9 that contains one ankyrin repeat domain. In this study, the crystal structure of hASB9-2 is shown at 2.2-Å resolution using molecular replacement. Overall, hASB9-2 forms a slightly curved arch with a characteristic L-shaped cross-section. Amino acid substitution analysis based on docking experiments revealed that His103 and Phe107 in hASB9-2 are essential for binding to CKB. Analysis of truncation mutants demonstrated that the first six ankyrin repeats along with the N-terminal region of hASB9-2 contribute to the interaction with CKB.

Indexed as

Amino Acid SequenceAnkyrin RepeatBinding SitesCreatine Kinase, BB FormCrystallography, X-RayHumansKineticsModels, MolecularMolecular Sequence DataProtein BindingSequence AlignmentSubstrate SpecificitySuppressor of Cytokine Signaling ProteinsASB9 protein, humanCreatine Kinase, BB FormSuppressor of Cytokine Signaling Proteins

Identifiers

PMID22418839
OpenAlexW2031468303

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.