Evidence map›Paper›PMID 22418280›Full record

ArticleBioorganic & medicinal chemistry letters2012

Development of clickable active site-directed photoaffinity probes for γ-secretase.

Christina J Crump, Christopher W am Ende, T Eric Ballard, Nikolay Pozdnyakov, Martin Pettersson, De-Ming Chau, Kelly R Bales, Yue-Ming Li, Douglas S Johnson

Open access · greenAbstract read
In one paragraph

Article in Bioorganic & medicinal chemistry letters, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Structural and Chemical Biology of Presenilin Complexes.Cold Spring Harbor perspectives in medicine · 2017
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Review
  12. Review
  13. Article
  14. Target deconvolution techniques in modern phenotypic profiling.Current opinion in chemical biology · 2013
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Christina J CrumpMolecular Pharmacology and Chemistry Program, Memorial Sloan-Kettering Cancer Center, New York, NY 10065, USA.
Christopher W am Ende
T Eric Ballard
Nikolay Pozdnyakov
Martin Pettersson
De-Ming Chau
Kelly R Bales
Yue-Ming Li
Douglas S Johnson
Pfizer (United States) · USMemorial Sloan Kettering Cancer Center · USCornell University · US

Funding

Regulation and Function of Gamma-SecretaseR01AG026660 · NIA · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI LI, YUEMING · 2005 to 2015
$3.5M
Predoctoral Training in Pharmacological SciencesT32GM073546 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI GROSS, STEVEN S · 2006 to 2020
$3.1M
Mechanism and therapy of AB-42-specific gamma-secretaseR01NS076117 · NINDS · SLOAN-KETTERING INST CAN RESEARCH · PI LI, YUEMING, ZHENG, HUI · 2011 to 2015
$2.8M
NIA NIH HHS 2R01AG026660NIA NIH HHS R01 AG026660NIGMS NIH HHS T32 GM073546NIGMS NIH HHS T32 GM073546-01A1NINDS NIH HHS 1R01NS076117NINDS NIH HHS R01 NS076117
6 · The paper itself

Abstract

We have developed clickable active site-directed photoaffinity probes for γ-secretase which incorporate a photoreactive benzophenone group and an alkyne handle for subsequent click chemistry mediated conjugation with azide-linked reporter tags for visualization (e.g., TAMRA-azide) or enrichment (e.g., biotin-azide) of labeled proteins. Specifically, we synthesized clickable analogs of L646 (2) and L505 (3) and validated specific labeling to presenilin-1N-terminal fragment (PS1-NTF), the active site aspartyl protease component within the γ-secretase complex. Additionally, we were able to identify signal peptide peptidase (SPP) by Western blot analysis. Furthermore, we analyzed the photo-labeled proteins in an unbiased fashion by click chemistry with TAMRA-azide followed by in-gel fluorescence detection. This approach expands the utility of γ-secretase inhibitor (GSI) photoaffinity probes in that labeled proteins can be tagged with any number of azide-linked reporters groups using a single clickable photoaffinity probe for target pull down and/or fluorescent imaging applications.

Indexed as

Amyloid Precursor Protein SecretasesAlkynesBenzophenonesBlotting, WesternCatalytic DomainClick ChemistryHeLa CellsHumansInhibitory Concentration 50Molecular StructurePhotoaffinity LabelsAlkynesAmyloid Precursor Protein SecretasesbenzophenoneBenzophenonesPhotoaffinity Labels

Identifiers

PMID22418280
PMCPMC3321063
OpenAlexW2019961788

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.