Evidence map›Paper›PMID 22417533›Full record

ArticleBiochemistry2012

MacA is a second cytochrome c peroxidase of Geobacter sulfurreducens.

Julian Seidel, Maren Hoffmann, Katie E Ellis, Antonia Seidel, Thomas Spatzal, Stefan Gerhardt, Sean J Elliott, Oliver Einsle

Abstract read
In one paragraph

Article in Biochemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 47 citations in OpenAlex.

  1. Review
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  4. Exploring oxidative stress pathways inFrontiers in microbiology · 2023
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  5. AlphaFold2 fails to predict protein fold switching.Protein science : a publication of the Protein Society · 2022
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  6. Article
  7. Article
  8. Cytochromes in Extracellular Electron Transfer inApplied and environmental microbiology · 2021
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Structure of the processive rubber oxygenase RoxA from Xanthomonas sp.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  16. Article
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Julian SeidelLehrstuhl für Biochemie, Institut für Organische Chemie und Biochemie, Albert-Ludwigs-Universität Freiburg, Albertstraße 21, 79104 Freiburg, Germany.
Maren Hoffmann
Katie E Ellis
Antonia Seidel
Thomas Spatzal
Stefan Gerhardt
Sean J Elliott
Oliver Einsle
University of Freiburg · DEBoston University · US

Funding

The Electrochemistry of Diheme Cytochrome c PeroxidasesR01GM072663 · NIGMS · BOSTON UNIVERSITY (CHARLES RIVER CAMPUS) · PI ELLIOTT, SEAN J · 2006 to 2010
$1.2M
NIGMS NIH HHS R01 GM072663NIGMS NIH HHS R01-GM072663
6 · The paper itself

Abstract

The metal-reducing δ-proteobacterium Geobacter sulfurreducens produces a large number of c-type cytochromes, many of which have been implicated in the transfer of electrons to insoluble metal oxides. Among these, the dihemic MacA was assigned a central role. Here we have produced G. sulfurreducens MacA by recombinant expression in Escherichia coli and have solved its three-dimensional structure in three different oxidation states. Sequence comparisons group MacA into the family of diheme cytochrome c peroxidases, and the protein indeed showed hydrogen peroxide reductase activity with ABTS(-2) as an electron donor. The observed K(M) was 38.5 ± 3.7 μM H(2)O(2) and v(max) was 0.78 ± 0.03 μmol of H(2)O(2)·min(-1)·mg(-1), resulting in a turnover number k(cat) = 0.46 · s(-1). In contrast, no Fe(III) reductase activity was observed. MacA was found to display electrochemical properties similar to other bacterial diheme peroxidases, in addition to the ability to electrochemically mediate electron transfer to the soluble cytochrome PpcA. Differences in activity between CcpA and MacA can be rationalized with structural variations in one of the three loop regions, loop 2, that undergoes conformational changes during reductive activation of the enzyme. This loop is adjacent to the active site heme and forms an open loop structure rather than a more rigid helix as in CcpA. For the activation of the protein, the loop has to displace the distal ligand to the active site heme, H93, in loop 1. A H93G variant showed an unexpected formation of a helix in loop 2 and disorder in loop 1, while a M297H variant that altered the properties of the electron transfer heme abolished reductive activation.

Indexed as

Base SequenceBiocatalysisCytochrome-c PeroxidaseDNA PrimersElectrochemistryGeobacterModels, MolecularMutagenesis, Site-DirectedOxidation-ReductionCytochrome-c PeroxidaseDNA Primers

Identifiers

PMID22417533
PMCPMC3724352
OpenAlexW2414777943

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.