Evidence map›Paper›PMID 22415777›Full record

ArticleMolecular systems biology2012

Proteomic and protein interaction network analysis of human T lymphocytes during cell-cycle entry.

Stephen J Orr, Daniel R Boutz, Rong Wang, Constantinos Chronis, Nicholas C Lea, Thivyan Thayaparan, Emma Hamilton, Hanna Milewicz, Eric Blanc, Ghulam J Mufti and 2 more

Abstract read
In one paragraph

Article in Molecular systems biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Protein networks and activation of lymphocytes.Current opinion in immunology · 2015
    Review
  5. Anti-tumoral effects of miR-3189-3p in glioblastoma.The Journal of biological chemistry · 2015
    Article
  6. Article
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Stephen J OrrDepartment of Haematological Medicine, Leukaemia Sciences Laboratories, Rayne Institute, King's College London, UK.
Daniel R Boutz
Rong Wang
Constantinos Chronis
Nicholas C Lea
Thivyan Thayaparan
Emma Hamilton
Hanna Milewicz
Eric Blanc
Ghulam J Mufti
Edward M Marcotte
N Shaun B Thomas

Funding

Proteomics of widespread, reversible protein assemblies in aging and aggregationR01GM076536 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI MARCOTTE, EDWARD M · 2006 to 2014
$2.9M
Medical Research CouncilNIGMS NIH HHS R01 GM076536
6 · The paper itself

Abstract

Regulating the transition of cells such as T lymphocytes from quiescence (G(0)) into an activated, proliferating state involves initiation of cellular programs resulting in entry into the cell cycle (proliferation), the growth cycle (blastogenesis, cell size) and effector (functional) activation. We show the first proteomic analysis of protein interaction networks activated during entry into the first cell cycle from G(0). We also provide proof of principle that blastogenesis and proliferation programs are separable in primary human T cells. We employed a proteomic profiling method to identify large-scale changes in chromatin/nuclear matrix-bound and unbound proteins in human T lymphocytes during the transition from G(0) into the first cell cycle and mapped them to form functionally annotated, dynamic protein interaction networks. Inhibiting the induction of two proteins involved in two of the most significantly upregulated cellular processes, ribosome biogenesis (eIF6) and hnRNA splicing (SF3B2/SF3B4), showed, respectively, that human T cells can enter the cell cycle without growing in size, or increase in size without entering the cell cycle.

Indexed as

Protein Interaction MapsProteomicsCell CycleCell NucleusCell ProliferationChromatinCluster AnalysisDNA-Binding ProteinsEukaryotic Initiation FactorsG1 PhaseHumansNuclear Matrix-Associated ProteinsNuclear ProteinsResting Phase, Cell CycleRNA-Binding ProteinsRNA Splicing FactorsChromatinDNA-Binding ProteinsEIF6 protein, humanEukaryotic Initiation FactorsNuclear Matrix-Associated ProteinsNuclear ProteinsRNA-Binding ProteinsRNA Splicing FactorsSF3B2 protein, humanSF3B4 protein, humanXIRP1 protein, human

Identifiers

PMID22415777
PMCPMC3321526

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.