Evidence map›Paper›PMID 22412907›Full record

ArticlePloS one2012

Calbindin-D32k is localized to a subpopulation of neurons in the nervous system of the sea cucumber Holothuria glaberrima (Echinodermata).

Carlos A Díaz-Balzac, María I Lázaro-Peña, Enrique M García-Rivera, Carlos I González, José E García-Arrarás

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
2.3field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 11 citations in OpenAlex.

  1. A START-domain-containing protein is a novel marker of nervous system components of the sea cucumber Holothuria glaberrima.Comparative biochemistry and physiology. Part B, Biochemistry & molecular biology · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Carlos A Díaz-BalzacDepartment of Genetics, Albert Einstein College of Medicine, Bronx, New York, United States of America.
María I Lázaro-Peña
Enrique M García-Rivera
Carlos I González
José E García-Arrarás
University of Puerto Rico at Río Piedras · PRAlbert Einstein College of Medicine · US

Funding

Upgrade Laboratories Facilities at UPR-Rio PiedrasR25GM061151 · NIGMS · UNIVERSITY OF PUERTO RICO RIO PIEDRAS · PI CARBALLEIRA, NESTOR MANUEL · 2001 to 2023
$32.5M
RIO PIEDRAS MARC U*STAR DEVELOPMENT PROGRAMT34GM007821 · NIGMS · UNIVERSITY OF PUERTO RICO RIO PIEDRAS · PI CARBALLEIRA, NESTOR MANUEL · 1985 to 2020
$20.3M
Molecular control of intestinal regenerationSC1GM084770 · NIGMS · UNIVERSITY OF PUERTO RICO RIO PIEDRAS · PI GARCIA-ARRARAS, JOSE E · 2008 to 2011
$1.5M
Gene profiling of nervous system regeneration using a novel model organismR03NS065275 · NINDS · UNIVERSITY OF PUERTO RICO RIO PIEDRAS · PI GARCIA-ARRARAS, JOSE E · 2009 to 2010
$149k
NIGMS NIH HHS 1SC1GM084770-01NIGMS NIH HHS 2R25GM061151NIGMS NIH HHS 5T34GM007821NIGMS NIH HHS R25 GM061151NIGMS NIH HHS SC1 GM084770NIGMS NIH HHS T34 GM007821NINDS NIH HHS 1R03NS065275-01NINDS NIH HHS R03 NS065275PHS HHS RRO-3641-01
6 · The paper itself

Abstract

Members of the calbindin subfamily serve as markers of subpopulations of neurons within the vertebrate nervous system. Although markers of these proteins are widely available and used, their application to invertebrate nervous systems has been very limited. In this study we investigated the presence and distribution of members of the calbindin subfamily in the sea cucumber Holothuria glaberrima (Selenka, 1867). Immunohistological experiments with antibodies made against rat calbindin 1, parvalbumin, and calbindin 2, showed that these antibodies labeled cells and fibers within the nervous system of H. glaberrima. Most of the cells and fibers were co-labeled with the neural-specific marker RN1, showing their neural specificity. These were distributed throughout all of the nervous structures, including the connective tissue plexi of the body wall and podia. Bioinformatics analyses of the possible antigen recognized by these markers showed that a calbindin 2-like protein present in the sea urchin Strongylocentrotus purpuratus, corresponded to the calbindin-D32k previously identified in other invertebrates. Western blots with anti-calbindin 1 and anti-parvalbumin showed that these markers recognized an antigen of approximately 32 kDa in homogenates of radial nerve cords of H. glaberrima and Lytechinus variegatus. Furthermore, immunoreactivity with anti-calbindin 1 and anti-parvalbumin was obtained to a fragment of calbindin-D32k of H. glaberrima. Our findings suggest that calbindin-D32k is present in invertebrates and its sequence is more similar to the vertebrate calbindin 2 than to calbindin 1. Thus, characterization of calbindin-D32k in echinoderms provides an important view of the evolution of this protein family and represents a valuable marker to study the nervous system of invertebrates.

Indexed as

Amino Acid SequenceAnimalsCalbindin 1CalbindinsCalcium-Binding ProteinsEvolution, MolecularMolecular Sequence DataNeuronsOrgan SpecificityParvalbuminsPhylogenyProtein Structure, TertiaryS100 Calcium Binding Protein GSea CucumbersSequence AlignmentCalb1 protein, ratCalbindin 1CalbindinsCalcium-Binding ProteinsParvalbuminsS100 Calcium Binding Protein G

Identifiers

PMID22412907
PMCPMC3296734
OpenAlexW2029346767

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.