Evidence map›Paper›PMID 22411836›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2012

Tfb6, a previously unidentified subunit of the general transcription factor TFIIH, facilitates dissociation of Ssl2 helicase after transcription initiation.

Kenji Murakami, Brian J Gibbons, Ralph E Davis, Shigeki Nagai, Xin Liu, Philip J J Robinson, Tinghe Wu, Craig D Kaplan, Roger D Kornberg

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. The essential and multifunctional TFIIH complex.Protein science : a publication of the Protein Society · 2018
    Review
  10. Def1 interacts with TFIIH and modulates RNA polymerase II transcription.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Structural basis of transcription initiation by RNA polymerase II.Nature reviews. Molecular cell biology · 2015
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Kenji MurakamiDepartment of Structural Biology, Stanford University, Stanford, CA 94305, USA.
Brian J Gibbons
Ralph E Davis
Shigeki Nagai
Xin Liu
Philip J J Robinson
Tinghe Wu
Craig D Kaplan
Roger D Kornberg
Stanford University · USTexas A&M University · US

Funding

Structure of the Eukaryote Transcription ApparatusR01AI021144 · NIAID · STANFORD UNIVERSITY · PI KORNBERG, ROGER D · 1985 to 2018
$10.3M
RNA POLYMERASE II TRANSCRIPTION SYSTEM FROM YEASTR01GM036659 · NIGMS · STANFORD UNIVERSITY · PI KORNBERG, ROGER D · 1986 to 2016
$4.7M
RNA POLYMERASE II TRANSCRIPTION SYSTEM FROM YEASTR37GM036659 · NIGMS · STANFORD UNIVERSITY · PI KORNBERG, ROGER D · 1998 to 2008
$4.6M
Mechanism and Regulation of RNA Polymerase II ElongationR01GM097260 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI KAPLAN, CRAIG · 2011 to 2020
$3.3M
NIAID NIH HHS AI21144NIAID NIH HHS R01 AI021144NIGMS NIH HHS GM36659NIGMS NIH HHS R01 GM036659NIGMS NIH HHS R01 GM097260NIGMS NIH HHS R37 GM036659
6 · The paper itself

Abstract

General transcription factor TFIIH, previously described as a 10-subunit complex, is essential for transcription and DNA repair. An eleventh subunit now identified, termed Tfb6, exhibits 45% sequence similarity to human nuclear mRNA export factor 5. Tfb6 dissociates from TFIIH as a heterodimer with the Ssl2 subunit, a DNA helicase that drives promoter melting for the initiation of transcription. Tfb6 does not, however, dissociate Ssl2 from TFIIH in the context of a fully assembled transcription preinitiation complex. Our findings suggest a dynamic state of Ssl2, allowing its engagement in multiple cellular processes.

Indexed as

Transcription, GeneticChromatography, LiquidDNA HelicasesGene DeletionGene Expression Regulation, FungalHumansMass SpectrometryPhenotypePhosphorylationProtein BindingProtein SubunitsRNA, MessengerSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTemperatureTranscription FactorsDNA HelicasesProtein SubunitsRNA, MessengerSaccharomyces cerevisiae ProteinsSSL2 protein, S cerevisiaeTfb6 protein, S cerevisiaeTranscription FactorsTranscription Factor TFIIH

Identifiers

PMID22411836
PMCPMC3323989
OpenAlexW1983603366

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.