Evidence map›Paper›PMID 22411095›Full record

ArticleProteins2012

Functional and structural characterization of a thermostable acetyl esterase from Thermotoga maritima.

Mark Levisson, Gye Won Han, Marc C Deller, Qingping Xu, Peter Biely, Sjon Hendriks, Lynn F Ten Eyck, Claus Flensburg, Pietro Roversi, Mitchell D Miller and 9 more

Abstract read
In one paragraph

Article in Proteins, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 48 citations in OpenAlex.

  1. Article
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  6. Structure andOpen biology · 2021
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  19. Automated identification of elemental ions in macromolecular crystal structures.Acta crystallographica. Section D, Biological crystallography · 2014
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 7 institutions in 4 countries.

Mark LevissonLaboratory of Microbiology, Wageningen University, Dreijenplein 10, 6703 HB, Wageningen, The Netherlands.
Gye Won Han
Marc C Deller
Qingping Xu
Peter Biely
Sjon Hendriks
Lynn F Ten Eyck
Claus Flensburg
Pietro Roversi
Mitchell D Miller
Daniel McMullan
Frank von Delft
Andreas Kreusch
Ashley M Deacon
John van der Oost
Scott A Lesley
Marc-André Elsliger
Servé W M Kengen
Ian A Wilson
Joint Center for Structural Genomics · USScripps Research Institute · USWageningen University & Research · NLGenomics Institute of the Novartis Research Foundation · USGlobal Phasing (United Kingdom) · GBSan Diego Supercomputer Center · USSlovak Academy of Sciences · SK

Funding

Technology Evaluation CoreU54GM074898 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI STEVENS, RAYMOND C · 2005 to 2009
$50.6M
Structure Determination Core at SSRLU54GM094586 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI WILSON, IAN A · 2010 to 2014
$40.1M
ZWITTERION SURFACTANT DDMAB FOR IMPROV STABIL OF PROTEINP41RR001209 · NCRR · STANFORD UNIVERSITY · PI GONZALEZ, ANA M · 1985 to 2011
$38.9M
NCRR NIH HHS P41 RR001209NIGMS NIH HHS U54 GM074898NIGMS NIH HHS U54 GM094586
6 · The paper itself

Abstract

TM0077 from Thermotoga maritima is a member of the carbohydrate esterase family 7 and is active on a variety of acetylated compounds, including cephalosporin C. TM0077 esterase activity is confined to short-chain acyl esters (C2-C3), and is optimal around 100°C and pH 7.5. The positional specificity of TM0077 was investigated using 4-nitrophenyl-β-D-xylopyranoside monoacetates as substrates in a β-xylosidase-coupled assay. TM0077 hydrolyzes acetate at positions 2, 3, and 4 with equal efficiency. No activity was detected on xylan or acetylated xylan, which implies that TM0077 is an acetyl esterase and not an acetyl xylan esterase as currently annotated. Selenomethionine-substituted and native structures of TM0077 were determined at 2.1 and 2.5 Å resolution, respectively, revealing a classic α/β-hydrolase fold. TM0077 assembles into a doughnut-shaped hexamer with small tunnels on either side leading to an inner cavity, which contains the six catalytic centers. Structures of TM0077 with covalently bound phenylmethylsulfonyl fluoride and paraoxon were determined to 2.4 and 2.1 Å, respectively, and confirmed that both inhibitors bind covalently to the catalytic serine (Ser188). Upon binding of inhibitor, the catalytic serine adopts an altered conformation, as observed in other esterase and lipases, and supports a previously proposed catalytic mechanism in which Ser hydroxyl rotation prevents reversal of the reaction and allows access of a water molecule for completion of the reaction.

Indexed as

AcetylesteraseCatalytic DomainComputer SimulationCrystallography, X-RayEnzyme StabilityHot TemperatureHydrogen-Ion ConcentrationModels, MolecularProtein ConformationReproducibility of ResultsSerineThermotoga maritimaAcetylesteraseSerine

Identifiers

PMID22411095
PMCPMC3348966
OpenAlexW2108788749

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.