Evidence map›Paper›PMID 22407320›Full record

ArticleNature2012

Identification and characterization of a bacterial hydrosulphide ion channel.

Bryan K Czyzewski, Da-Neng Wang

Open access · greenAbstract read
In one paragraph

Article in Nature, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 76 papers.

0numbers the graph read from it
0cells of the map it votes in
76citing papers in PubMed
8.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

76 citing papers in PubMed, 150 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Microbial membrane transport proteins and their biotechnological applications.World journal of microbiology & biotechnology · 2024
    Review
  7. Article
  8. Review
  9. Article
  10. Populational genomic insights ofFrontiers in microbiology · 2023
    Article
  11. Evolutionary Overview of Aquaporin Superfamily.Advances in experimental medicine and biology · 2023
    Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. C-H⋯S hydrogen bonding interactions.Chemical Society reviews · 2022
    Review
  17. Article
  18. Review
  19. Review
  20. Article

16 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Bryan K CzyzewskiThe Helen L. and Martin S. Kimmel Center for Biology and Medicine at the Skirball Institute of Biomolecular Medicine, New York University School of Medicine, 540 First Avenue, New York, New York 10016, USA.
Da-Neng Wang
New York University · US

Funding

Sub 9 at AECMU54GM075026 · NIGMS · NEW YORK STRUCTURAL BIOLOGY CENTER · PI GOUAUX, JAMES E · 2005 to 2009
$16.8M
STRUCTURAL STUDIES OF SUGAR TRANSPORTERSR01DK053973 · NIDDK · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI WANG, DANENG · 1998 to 2014
$3.6M
Structural and Mechanistic Characterization of Neurotransmitter Reuptake InhibitiR01MH083840 · NIMH · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI WANG, DANENG · 2008 to 2012
$2.2M
Structural Basis of Tetracycline Resistance by Efflux Pump TetL.R01GM093825 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI WANG, DANENG · 2010 to 2014
$1.4M
Intra-renal Bold MRI: Application to Diabetic NephropathyR01DK073973 · NIDDK · NORTHSHORE UNIVERSITY HEALTHSYSTEM · PI PRASAD, POTTUMARTHI V · 2007 to 2009
$677k
Structural Studies of a Tetracycline Efflux PumpF31AI086072 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI CZYZEWSKI, BRYAN K. · 2010 to 2011
$78k
NIAID NIH HHS F31 AI086072NIAID NIH HHS F31-AI086072NIDDK NIH HHS R01 DK053973NIDDK NIH HHS R01-DK053973-08A1S1NIDDK NIH HHS R01 DK073973NIDDK NIH HHS R01-DK073973NIGMS NIH HHS R01 GM093825NIGMS NIH HHS R01-GM093825NIGMS NIH HHS U54 GM075026NIGMS NIH HHS U54-GM075026NIMH NIH HHS R01 MH083840NIMH NIH HHS R01-MH083840
6 · The paper itself

Abstract

The hydrosulphide ion (HS(-)) and its undissociated form, hydrogen sulphide (H(2)S), which are believed to have been critical to the origin of life on Earth, remain important in physiology and cellular signalling. As a major metabolite in anaerobic bacterial growth, hydrogen sulphide is a product of both assimilatory and dissimilatory sulphate reduction. These pathways can reduce various oxidized sulphur compounds including sulphate, sulphite and thiosulphate. The dissimilatory sulphate reduction pathway uses this molecule as the terminal electron acceptor for anaerobic respiration, in which process it produces excess amounts of H(2)S (ref. 4). The reduction of sulphite is a key intermediate step in all sulphate reduction pathways. In Clostridium and Salmonella, an inducible sulphite reductase is directly linked to the regeneration of NAD(+), which has been suggested to have a role in energy production and growth, as well as in the detoxification of sulphite. Above a certain concentration threshold, both H(2)S and HS(-) inhibit cell growth by binding the metal centres of enzymes and cytochrome oxidase, necessitating a release mechanism for the export of this toxic metabolite from the cell. Here we report the identification of a hydrosulphide ion channel in the pathogen Clostridium difficile through a combination of genetic, biochemical and functional approaches. The HS(-) channel is a member of the formate/nitrite transport family, in which about 50 hydrosulphide ion channels form a third subfamily alongside those for formate (FocA) and for nitrite (NirC). The hydrosulphide ion channel is permeable to formate and nitrite as well as to HS(-) ions. Such polyspecificity can be explained by the conserved ion selectivity filter observed in the channel's crystal structure. The channel has a low open probability and is tightly regulated, to avoid decoupling of the membrane proton gradient.

Indexed as

Clostridioides difficileBacterial ProteinsCrystallography, X-RayFormatesIon Channel GatingIon ChannelsIon TransportModels, BiologicalModels, MolecularNitritesOperonProteolipidsProton-Motive ForceStructure-Activity RelationshipSubstrate SpecificitySulfidesBacterial ProteinsFormatesformic acidIon ChannelsNitritesProteolipidsproteoliposomesSulfides

Identifiers

PMID22407320
PMCPMC3711795
OpenAlexW2035816104

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.