Evidence map›Paper›PMID 22407130›Full record

ArticleHuman molecular genetics2012

Identification of CSK as a systemic sclerosis genetic risk factor through Genome Wide Association Study follow-up.

Jose-Ezequiel Martin, Jasper C Broen, F David Carmona, Maria Teruel, Carmen P Simeon, Madelon C Vonk, Ruben van 't Slot, Luis Rodriguez-Rodriguez, Esther Vicente, Vicente Fonollosa and 31 more

Open access · bronzeAbstract read
In one paragraph

Article in Human molecular genetics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers, 7 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed, 7 pooled it
7.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 7 syntheses or guidelines pooled it, 96 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Transethnic meta-analysis identifiesAnnals of the rheumatic diseases · 2017
    Pooled it
  4. Pooled it
  5. Pooled it
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  7. Pooled it
  8. Review
  9. Article
  10. Review
  11. Review
  12. Article
  13. Review
  14. Article
  15. Updates on genetics in systemic sclerosis.Inflammation and regeneration · 2021
    Review
  16. Article
  17. Genetics of systemic sclerosis.Journal of scleroderma and related disorders · 2020
    Review
  18. Molecular "omic" signatures in systemic sclerosis.European journal of rheumatology · 2020
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

41 authors at 20 institutions in 6 countries.

Jose-Ezequiel MartinInstituto de Parasitologia y Biomedicina Lopez-Neyra, CSIC, Granada, Spain. cebercoto@ipb.csic.es
Jasper C Broen
F David Carmona
Maria Teruel
Carmen P Simeon
Madelon C Vonk
Ruben van 't Slot
Luis Rodriguez-Rodriguez
Esther Vicente
Vicente Fonollosa
Norberto Ortego-Centeno
Miguel A González-Gay
Francisco J García-Hernández
Paloma García de la Peña
Patricia Carreira
Spanish Scleroderma Group
Alexandre E Voskuyl
Annemie J Schuerwegh
Piet L C M van Riel
Alexander Kreuter
Torsten Witte
Gabriella Riemekasten
Paolo Airo
Raffaella Scorza
Claudio Lunardi
Nicolas Hunzelmann
Jörg H W Distler
Lorenzo Beretta
Jacob van Laar
Meng May Chee
Jane Worthington
Ariane Herrick
Christopher Denton
Filemon K Tan
Frank C Arnett
Shervin Assassi
Carmen Fonseca
Maureen D Mayes
Timothy R D J Radstake
Bobby P C Koeleman
Javier Martin
Radboud University Nijmegen · NLInstituto de Parasitología y Biomedicina "López - Neyra" · ESManchester Academic Health Science Centre · GBThe Royal Free Hospital · GBHospital Virgen del Valle · ESLeiden University · NLMedizinische Hochschule Hannover · DEThe University of Texas Health Science Center at Houston · USUniversity Medical Center Utrecht · NLUniversity of Milan · ITUniversity of Verona · ITAmsterdam UMC Location Vrije Universiteit Amsterdam · NLAzienda Socio Sanitaria Territoriale degli Spedali Civili di Brescia · ITFriedrich-Alexander-Universität Erlangen-Nürnberg · DEGlasgow Royal Infirmary · GBHospital Clínico San Carlos · ESHospital Universitario de La Princesa · ESHospital Universitario Ramón y Cajal · ESHospital Universitario Virgen del Rocío · ESMarqués de Valdecilla University Hospital · ES

Funding

U OF TEXAS HLTH SCI CTR HOUSTON CENTER FOR CLINICAL AND TRANSLATIONAL SCIENCESUL1RR024148 · NCRR · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI MCPHERSON, DAVID D · 2006 to 2010
$27.9M
Role of TGF-beta and CTGF Signaling Transgenic Mouse Models of SclerodermaP50AR054144 · NIAMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI TAN, FILEMON K. · 2006 to 2010
$7.7M
CTSA: K12 COMPONENTKL2RR024149 · NCRR · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI MCPHERSON, DAVID D · 2006 to 2011
$6.7M
Two-Stage Genome-Wide Association Study in Systemic SclerosisR01AR055258 · NIAMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI MAYES, MAUREEN MAUREEN · 2008 to 2012
$5.9M
SCLERODERMA FAMILY REGISTRY AND DNA REPOSITORY-264002251-264002251-264002251N01AR002251 · NIAMS · WAYNE STATE UNIVERSITY · PI MAYES, MAUREEN · 2000 to 2006
$659k
Arthritis Research UK 17552NCRR NIH HHS KL2 RR024149NCRR NIH HHS UL1 RR024148NIAMS NIH HHS 1P50AR054144NIAMS NIH HHS N01 AR002251NIAMS NIH HHS N01-AR-0-2251NIAMS NIH HHS P50 AR054144NIAMS NIH HHS R01 AR055258NIAMS NIH HHS R01- AR055258
6 · The paper itself

Abstract

Systemic sclerosis (SSc) is complex autoimmune disease affecting the connective tissue; influenced by genetic and environmental components. Recently, we performed the first successful genome-wide association study (GWAS) of SSc. Here, we perform a large replication study to better dissect the genetic component of SSc. We selected 768 polymorphisms from the previous GWAS and genotyped them in seven replication cohorts from Europe. Overall significance was calculated for replicated significant SNPs by meta-analysis of the replication cohorts and replication-GWAS cohorts (3237 cases and 6097 controls). Six SNPs in regions not previously associated with SSc were selected for validation in another five independent cohorts, up to a total of 5270 SSc patients and 8326 controls. We found evidence for replication and overall genome-wide significance for one novel SSc genetic risk locus: CSK [P-value = 5.04 × 10(-12), odds ratio (OR) = 1.20]. Additionally, we found suggestive association in the loci PSD3 (P-value = 3.18 × 10(-7), OR = 1.36) and NFKB1 (P-value = 1.03 × 10(-6), OR = 1.14). Additionally, we strengthened the evidence for previously confirmed associations. This study significantly increases the number of known putative genetic risk factors for SSc, including the genes CSK, PSD3 and NFKB1, and further confirms six previously described ones.

Indexed as

Polymorphism, Single Nucleotidebeta KaryopherinsCohort StudiesCSK Tyrosine-Protein KinaseEuropeFollow-Up StudiesGenetic Predisposition to DiseaseGenome-Wide Association StudyGenotypeHumansInterferon Regulatory Factor-8Interferon Regulatory FactorsMeta-Analysis as TopicNF-kappa B p50 SubunitOdds RatioProtein-Tyrosine Kinasesbeta KaryopherinsCSK protein, humanCSK Tyrosine-Protein KinaseInterferon Regulatory Factor-8Interferon Regulatory FactorsIRF5 protein, humanNF-kappa B p50 SubunitNFKB1 protein, humanProtein-Tyrosine Kinasessrc-Family KinasesTNPO3 protein, human

Identifiers

PMID22407130
PMCPMC3368627
OpenAlexW2123909866

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.