Evidence map›Paper›PMID 22407015›Full record

ArticleNature structural & molecular biology2012

A conserved proline switch on the ribosome facilitates the recruitment and binding of trGTPases.

Li Wang, Fang Yang, Dejiu Zhang, Zhi Chen, Rui-Ming Xu, Knud H Nierhaus, Weimin Gong, Yan Qin

Abstract read
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In one paragraph

Article in Nature structural & molecular biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Article
  3. Direct visualization of translational GTPase factor pool formed around the archaeal ribosomal P-stalk by high-speed AFM.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  4. Article
  5. Article
  6. Subinhibitory Concentrations of Bacteriostatic Antibiotics InduceAntimicrobial agents and chemotherapy · 2017
    Article
  7. Article
  8. Article
  9. Functional Importance of Mobile Ribosomal Proteins.BioMed research international · 2015
    Review
  10. Article
  11. Review
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Li WangNational Laboratory of Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing, China.
Fang Yang
Dejiu Zhang
Zhi Chen
Rui-Ming Xu
Knud H Nierhaus
Weimin Gong
Yan Qin
Chinese Academy of Sciences · CNUniversity of Science and Technology of China · CNInstitute of Biophysics · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

When elongation factor G (EF-G) binds to the ribosome, it first makes contact with the C-terminal domain (CTD) of L12 before interacting with the N-terminal domain (NTD) of L11. Here we have identified a universally conserved residue, Pro22 of L11, that functions as a proline switch (PS22), as well as the corresponding center of peptidyl-prolyl cis-trans isomerase (PPIase) activity on EF-G that drives the cis-trans isomerization of PS22. Only the cis configuration of PS22 allows direct contact between the L11 NTD and the L12 CTD. Mutational analyses of both PS22 and the residues of the EF-G PPIase center reveal their function in translational GTPase (trGTPase) activity, protein synthesis and cell survival in Escherichia coli. Finally, we demonstrate that all known universal trGTPases contain an active PPIase center. Our observations suggest that the cis-trans isomerization of the L11 PS22 is a universal event required for an efficient turnover of trGTPases throughout the translation process.

Indexed as

Amino Acid SequenceConserved SequenceEscherichia coliEscherichia coli ProteinsGTP PhosphohydrolasesGuanosine TriphosphateIsomerismModels, MolecularMolecular Sequence DataPeptide Elongation Factor GPeptidylprolyl IsomeraseProlineRibosomesSequence AlignmentEscherichia coli ProteinsGTP PhosphohydrolasesGuanosine TriphosphatePeptide Elongation Factor GPeptidylprolyl IsomeraseProline

Identifiers

PMID22407015
OpenAlexW2161648231

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.